Gene : Seita.9G262100 S. italica v2.2
Defline:  (1 of 1) PTHR22950//PTHR22950:SF279 - AMINO ACID TRANSPORTER Genomic Order:  2621
Name:  ? Seita.9G262100 Secondary Identifier:  ? PAC:32688526
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G262100 0.5kb upstream 0.5kb upstream 3010 true scaffold_9: 21655765-21658774 Setaria italica
Seita.9G262100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 21655765-21656264 Setaria italica
Seita.9G262100 0.5kb downstream 0.5kb downstream 3010 true scaffold_9: 21656265-21659274 Setaria italica
Seita.9G262100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 21658775-21659274 Setaria italica
Seita.9G262100 1.0kb upstream 1.0kb upstream 3510 true scaffold_9: 21655265-21658774 Setaria italica
Seita.9G262100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 21655265-21656264 Setaria italica
Seita.9G262100 1.0kb downstream 1.0kb downstream 3510 true scaffold_9: 21656265-21659774 Setaria italica
Seita.9G262100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 21658775-21659774 Setaria italica
Seita.9G262100 2.0kb upstream 2.0kb upstream 4510 true scaffold_9: 21654265-21658774 Setaria italica
Seita.9G262100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 21654265-21656264 Setaria italica
Seita.9G262100 2.0kb downstream 2.0kb downstream 4510 true scaffold_9: 21656265-21660774 Setaria italica
Seita.9G262100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 21658775-21660774 Setaria italica
Seita.9G262100 5.0kb upstream 5.0kb upstream 7510 true scaffold_9: 21651265-21658774 Setaria italica
Seita.9G262100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 21651265-21656264 Setaria italica
Seita.9G262100 5.0kb downstream 5.0kb downstream 7510 true scaffold_9: 21656265-21663774 Setaria italica
Seita.9G262100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 21658775-21663774 Setaria italica
Seita.9G262100 10.0kb upstream 10.0kb upstream 12510 true scaffold_9: 21646265-21658774 Setaria italica
Seita.9G262100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 21646265-21656264 Setaria italica
Seita.9G262100 10.0kb downstream 10.0kb downstream 12510 true scaffold_9: 21656265-21668774 Setaria italica
Seita.9G262100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 21658775-21668774 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188158 5267 Panicoideae View MSA
124571448 5269 Grass View MSA
122049335 5273 Angiosperm View MSA
123429000 5275 Viridiplantae View MSA
121348814 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.033     Low  
cufflinks 1.563       High
cufflinks 0.024     Low  
cufflinks 0.03     Low  
cufflinks 0.03     Low  
cufflinks 1.217       High
cufflinks 0.063     Low  
cufflinks 0.028     Low  
cufflinks 0.046     Low  
cufflinks 0.163     Low  
cufflinks 0.017     Low Low
cufflinks 0.391        
cufflinks 0.238        
cufflinks 0.295        
cufflinks 0.601       High
cufflinks 0.024     Low  
cufflinks 0.16        
cufflinks 0.03     Low  
cufflinks 0.038     Low  
cufflinks 0.23        

0 Strain