Gene : Seita.9G271300 S. italica v2.2
Defline:  (1 of 1) KOG0979 - Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily Genomic Order:  2713
Name:  ? Seita.9G271300 Secondary Identifier:  ? PAC:32691360
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G271300 0.5kb upstream 0.5kb upstream 9819 true scaffold_9: 23396672-23406490 Setaria italica
Seita.9G271300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 23396672-23397171 Setaria italica
Seita.9G271300 0.5kb downstream 0.5kb downstream 9819 true scaffold_9: 23397172-23406990 Setaria italica
Seita.9G271300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 23406491-23406990 Setaria italica
Seita.9G271300 1.0kb upstream 1.0kb upstream 10319 true scaffold_9: 23396172-23406490 Setaria italica
Seita.9G271300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 23396172-23397171 Setaria italica
Seita.9G271300 1.0kb downstream 1.0kb downstream 10319 true scaffold_9: 23397172-23407490 Setaria italica
Seita.9G271300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 23406491-23407490 Setaria italica
Seita.9G271300 2.0kb upstream 2.0kb upstream 11319 true scaffold_9: 23395172-23406490 Setaria italica
Seita.9G271300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 23395172-23397171 Setaria italica
Seita.9G271300 2.0kb downstream 2.0kb downstream 11319 true scaffold_9: 23397172-23408490 Setaria italica
Seita.9G271300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 23406491-23408490 Setaria italica
Seita.9G271300 5.0kb upstream 5.0kb upstream 14319 true scaffold_9: 23392172-23406490 Setaria italica
Seita.9G271300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 23392172-23397171 Setaria italica
Seita.9G271300 5.0kb downstream 5.0kb downstream 14319 true scaffold_9: 23397172-23411490 Setaria italica
Seita.9G271300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 23406491-23411490 Setaria italica
Seita.9G271300 10.0kb upstream 10.0kb upstream 19319 true scaffold_9: 23387172-23406490 Setaria italica
Seita.9G271300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 23387172-23397171 Setaria italica
Seita.9G271300 10.0kb downstream 10.0kb downstream 19319 true scaffold_9: 23397172-23416490 Setaria italica
Seita.9G271300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 23406491-23416490 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182088 5267 Panicoideae View MSA
124582435 5269 Grass View MSA
122048313 5273 Angiosperm View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.6     High High
cufflinks 44.284     High High
cufflinks 18.993     High  
cufflinks 15.279     High  
cufflinks 15.355     High  
cufflinks 43.932     High High
cufflinks 26.006     High  
cufflinks 21.108     High  
cufflinks 19.208     High  
cufflinks 6.749       Low
cufflinks 30.046     High  
cufflinks 16.518     High  
cufflinks 26.209     High  
cufflinks 14.104     High  
cufflinks 24.953     High  
cufflinks 34.918     High  
cufflinks 15.486     High  
cufflinks 39.242     High High
cufflinks 10.907       Low
cufflinks 17.745     High  

0 Strain