Gene : Seita.9G367100 S. italica v2.2
Defline:  (1 of 2) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  3671
Name:  ? Seita.9G367100 Secondary Identifier:  ? PAC:32690868
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G367100 0.5kb upstream 0.5kb upstream 11046 true scaffold_9: 42721634-42732679 Setaria italica
Seita.9G367100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 42721634-42722133 Setaria italica
Seita.9G367100 0.5kb downstream 0.5kb downstream 11046 true scaffold_9: 42722134-42733179 Setaria italica
Seita.9G367100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 42732680-42733179 Setaria italica
Seita.9G367100 1.0kb upstream 1.0kb upstream 11546 true scaffold_9: 42721134-42732679 Setaria italica
Seita.9G367100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 42721134-42722133 Setaria italica
Seita.9G367100 1.0kb downstream 1.0kb downstream 11546 true scaffold_9: 42722134-42733679 Setaria italica
Seita.9G367100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 42732680-42733679 Setaria italica
Seita.9G367100 2.0kb upstream 2.0kb upstream 12546 true scaffold_9: 42720134-42732679 Setaria italica
Seita.9G367100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 42720134-42722133 Setaria italica
Seita.9G367100 2.0kb downstream 2.0kb downstream 12546 true scaffold_9: 42722134-42734679 Setaria italica
Seita.9G367100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 42732680-42734679 Setaria italica
Seita.9G367100 5.0kb upstream 5.0kb upstream 15546 true scaffold_9: 42717134-42732679 Setaria italica
Seita.9G367100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 42717134-42722133 Setaria italica
Seita.9G367100 5.0kb downstream 5.0kb downstream 15546 true scaffold_9: 42722134-42737679 Setaria italica
Seita.9G367100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 42732680-42737679 Setaria italica
Seita.9G367100 10.0kb upstream 10.0kb upstream 20546 true scaffold_9: 42712134-42732679 Setaria italica
Seita.9G367100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 42712134-42722133 Setaria italica
Seita.9G367100 10.0kb downstream 10.0kb downstream 20546 true scaffold_9: 42722134-42742679 Setaria italica
Seita.9G367100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 42732680-42742679 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178596 5267 Panicoideae View MSA
124578331 5269 Grass View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.357        
cufflinks 2.847        
cufflinks 2.88        
cufflinks 2.824        
cufflinks 2.207        
cufflinks 2.99        
cufflinks 2.619        
cufflinks 2.286        
cufflinks 1.961        
cufflinks 1.265       Low
cufflinks 2.415        
cufflinks 3.019        
cufflinks 2.168        
cufflinks 2.271        
cufflinks 2.152        
cufflinks 4.124       High
cufflinks 2.427        
cufflinks 5.184       High
cufflinks 1.81       Low
cufflinks 2.277        

0 Strain