Gene : Seita.9G379900 S. italica v2.2
Defline:  (1 of 12) KOG1546 - Metacaspase involved in regulation of apoptosis Genomic Order:  3799
Name:  ? Seita.9G379900 Secondary Identifier:  ? PAC:32689049
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G379900 0.5kb upstream 0.5kb upstream 2332 true scaffold_9: 43922143-43924474 Setaria italica
Seita.9G379900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 43922143-43922642 Setaria italica
Seita.9G379900 0.5kb downstream 0.5kb downstream 2332 true scaffold_9: 43922643-43924974 Setaria italica
Seita.9G379900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 43924475-43924974 Setaria italica
Seita.9G379900 1.0kb upstream 1.0kb upstream 2832 true scaffold_9: 43921643-43924474 Setaria italica
Seita.9G379900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 43921643-43922642 Setaria italica
Seita.9G379900 1.0kb downstream 1.0kb downstream 2832 true scaffold_9: 43922643-43925474 Setaria italica
Seita.9G379900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 43924475-43925474 Setaria italica
Seita.9G379900 2.0kb upstream 2.0kb upstream 3832 true scaffold_9: 43920643-43924474 Setaria italica
Seita.9G379900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 43920643-43922642 Setaria italica
Seita.9G379900 2.0kb downstream 2.0kb downstream 3832 true scaffold_9: 43922643-43926474 Setaria italica
Seita.9G379900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 43924475-43926474 Setaria italica
Seita.9G379900 5.0kb upstream 5.0kb upstream 6832 true scaffold_9: 43917643-43924474 Setaria italica
Seita.9G379900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 43917643-43922642 Setaria italica
Seita.9G379900 5.0kb downstream 5.0kb downstream 6832 true scaffold_9: 43922643-43929474 Setaria italica
Seita.9G379900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 43924475-43929474 Setaria italica
Seita.9G379900 10.0kb upstream 10.0kb upstream 11832 true scaffold_9: 43912643-43924474 Setaria italica
Seita.9G379900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 43912643-43922642 Setaria italica
Seita.9G379900 10.0kb downstream 10.0kb downstream 11832 true scaffold_9: 43922643-43934474 Setaria italica
Seita.9G379900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 43924475-43934474 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994792 5273 Angiosperm View MSA
122190023 5267 Panicoideae View MSA
124585668 5269 Grass View MSA
123428899 5275 Viridiplantae View MSA
121265007 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.402        
cufflinks 0.068     Low Low
cufflinks 63.671     High  
cufflinks 93.691     High  
cufflinks 32.591     High  
cufflinks 0.088     Low Low
cufflinks 8.924        
cufflinks 52.608     High  
cufflinks 2.697        
cufflinks 12.741        
cufflinks 13.756     High  
cufflinks 59.942     High  
cufflinks 102.552     High  
cufflinks 55.088     High  
cufflinks 101.356     High  
cufflinks 0.424       Low
cufflinks 86.986     High  
cufflinks 0.075     Low Low
cufflinks 51.225     High  
cufflinks 221.564     High High

0 Strain