Gene : Seita.9G386300 S. italica v2.2
Defline:  (1 of 2) PTHR10996:SF108 - D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE-LIKE PROTEIN Genomic Order:  3863
Name:  ? Seita.9G386300 Secondary Identifier:  ? PAC:32692913
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G386300 0.5kb upstream 0.5kb upstream 5684 true scaffold_9: 44547998-44553681 Setaria italica
Seita.9G386300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 44547998-44548497 Setaria italica
Seita.9G386300 0.5kb downstream 0.5kb downstream 5684 true scaffold_9: 44548498-44554181 Setaria italica
Seita.9G386300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 44553682-44554181 Setaria italica
Seita.9G386300 1.0kb upstream 1.0kb upstream 6184 true scaffold_9: 44547498-44553681 Setaria italica
Seita.9G386300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 44547498-44548497 Setaria italica
Seita.9G386300 1.0kb downstream 1.0kb downstream 6184 true scaffold_9: 44548498-44554681 Setaria italica
Seita.9G386300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 44553682-44554681 Setaria italica
Seita.9G386300 2.0kb upstream 2.0kb upstream 7184 true scaffold_9: 44546498-44553681 Setaria italica
Seita.9G386300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 44546498-44548497 Setaria italica
Seita.9G386300 2.0kb downstream 2.0kb downstream 7184 true scaffold_9: 44548498-44555681 Setaria italica
Seita.9G386300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 44553682-44555681 Setaria italica
Seita.9G386300 5.0kb upstream 5.0kb upstream 10184 true scaffold_9: 44543498-44553681 Setaria italica
Seita.9G386300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 44543498-44548497 Setaria italica
Seita.9G386300 5.0kb downstream 5.0kb downstream 10184 true scaffold_9: 44548498-44558681 Setaria italica
Seita.9G386300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 44553682-44558681 Setaria italica
Seita.9G386300 10.0kb upstream 10.0kb upstream 15184 true scaffold_9: 44538498-44553681 Setaria italica
Seita.9G386300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 44538498-44548497 Setaria italica
Seita.9G386300 10.0kb downstream 10.0kb downstream 15184 true scaffold_9: 44548498-44563681 Setaria italica
Seita.9G386300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 44553682-44563681 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183723 5267 Panicoideae View MSA
124587466 5269 Grass View MSA
122051675 5273 Angiosperm View MSA
121344696 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.523        
cufflinks 2.844        
cufflinks 1.011       Low
cufflinks 0.585       Low
cufflinks 0.8       Low
cufflinks 2.771        
cufflinks 1.994        
cufflinks 2.595        
cufflinks 1.783        
cufflinks 4.969        
cufflinks 3.93        
cufflinks 4.267        
cufflinks 5.441        
cufflinks 4.337        
cufflinks 10.544       High
cufflinks 1.104       Low
cufflinks 8.205       High
cufflinks 0.986       Low
cufflinks 1.215        
cufflinks 6.007       High

0 Strain