Gene : Seita.9G398400 S. italica v2.2
Defline:  (1 of 7) 3.4.22.69 - SARS coronavirus main proteinase / Severe acute respiratory syndrome coronavirus main protease Genomic Order:  3984
Name:  ? Seita.9G398400 Secondary Identifier:  ? PAC:32688613
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G398400 0.5kb upstream 0.5kb upstream 1788 true scaffold_9: 45925000-45926787 Setaria italica
Seita.9G398400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 45925000-45925499 Setaria italica
Seita.9G398400 0.5kb downstream 0.5kb downstream 1788 true scaffold_9: 45925500-45927287 Setaria italica
Seita.9G398400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 45926788-45927287 Setaria italica
Seita.9G398400 1.0kb upstream 1.0kb upstream 2288 true scaffold_9: 45924500-45926787 Setaria italica
Seita.9G398400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 45924500-45925499 Setaria italica
Seita.9G398400 1.0kb downstream 1.0kb downstream 2288 true scaffold_9: 45925500-45927787 Setaria italica
Seita.9G398400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 45926788-45927787 Setaria italica
Seita.9G398400 2.0kb upstream 2.0kb upstream 3288 true scaffold_9: 45923500-45926787 Setaria italica
Seita.9G398400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 45923500-45925499 Setaria italica
Seita.9G398400 2.0kb downstream 2.0kb downstream 3288 true scaffold_9: 45925500-45928787 Setaria italica
Seita.9G398400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 45926788-45928787 Setaria italica
Seita.9G398400 5.0kb upstream 5.0kb upstream 6288 true scaffold_9: 45920500-45926787 Setaria italica
Seita.9G398400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 45920500-45925499 Setaria italica
Seita.9G398400 5.0kb downstream 5.0kb downstream 6288 true scaffold_9: 45925500-45931787 Setaria italica
Seita.9G398400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 45926788-45931787 Setaria italica
Seita.9G398400 10.0kb upstream 10.0kb upstream 11288 true scaffold_9: 45915500-45926787 Setaria italica
Seita.9G398400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 45915500-45925499 Setaria italica
Seita.9G398400 10.0kb downstream 10.0kb downstream 11288 true scaffold_9: 45925500-45936787 Setaria italica
Seita.9G398400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 45926788-45936787 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195365 5267 Panicoideae View MSA
124585602 5269 Grass View MSA
122048753 5273 Angiosperm View MSA
121311096 5274 Embryophyte View MSA
123348442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.979       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.318       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.215     Low  
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.128     Low  
cufflinks 0.024     Low  
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  

0 Strain