Gene : Seita.9G397500 S. italica v2.2
Defline:  (1 of 2) PTHR10182//PTHR10182:SF15 - CALCIUM-BINDING PROTEIN 39-RELATED Genomic Order:  3975
Name:  ? Seita.9G397500 Secondary Identifier:  ? PAC:32687916
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G397500 0.5kb upstream 0.5kb upstream 4898 true scaffold_9: 45847178-45852075 Setaria italica
Seita.9G397500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 45847178-45847677 Setaria italica
Seita.9G397500 0.5kb downstream 0.5kb downstream 4898 true scaffold_9: 45847678-45852575 Setaria italica
Seita.9G397500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 45852076-45852575 Setaria italica
Seita.9G397500 1.0kb upstream 1.0kb upstream 5398 true scaffold_9: 45846678-45852075 Setaria italica
Seita.9G397500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 45846678-45847677 Setaria italica
Seita.9G397500 1.0kb downstream 1.0kb downstream 5398 true scaffold_9: 45847678-45853075 Setaria italica
Seita.9G397500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 45852076-45853075 Setaria italica
Seita.9G397500 2.0kb upstream 2.0kb upstream 6398 true scaffold_9: 45845678-45852075 Setaria italica
Seita.9G397500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 45845678-45847677 Setaria italica
Seita.9G397500 2.0kb downstream 2.0kb downstream 6398 true scaffold_9: 45847678-45854075 Setaria italica
Seita.9G397500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 45852076-45854075 Setaria italica
Seita.9G397500 5.0kb upstream 5.0kb upstream 9398 true scaffold_9: 45842678-45852075 Setaria italica
Seita.9G397500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 45842678-45847677 Setaria italica
Seita.9G397500 5.0kb downstream 5.0kb downstream 9398 true scaffold_9: 45847678-45857075 Setaria italica
Seita.9G397500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 45852076-45857075 Setaria italica
Seita.9G397500 10.0kb upstream 10.0kb upstream 14398 true scaffold_9: 45837678-45852075 Setaria italica
Seita.9G397500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 45837678-45847677 Setaria italica
Seita.9G397500 10.0kb downstream 10.0kb downstream 14398 true scaffold_9: 45847678-45862075 Setaria italica
Seita.9G397500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 45852076-45862075 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180927 5267 Panicoideae View MSA
124572908 5269 Grass View MSA
122042724 5273 Angiosperm View MSA
121345752 5274 Embryophyte View MSA
123425225 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.092        
cufflinks 9.636       High
cufflinks 4.225        
cufflinks 3.868        
cufflinks 2.891       Low
cufflinks 9.277        
cufflinks 8.683        
cufflinks 4.696        
cufflinks 2.202       Low
cufflinks 4.862        
cufflinks 7.38        
cufflinks 4.985        
cufflinks 11.084       High
cufflinks 4.831        
cufflinks 11.723       High
cufflinks 6.894        
cufflinks 8.512        
cufflinks 3.996        
cufflinks 4.568        
cufflinks 8.838        

0 Strain