Gene : Seita.9G402000 S. italica v2.2
Defline:  (1 of 2) KOG4709 - Uncharacterized conserved protein Genomic Order:  4020
Name:  ? Seita.9G402000 Secondary Identifier:  ? PAC:32687237
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G402000 0.5kb upstream 0.5kb upstream 8949 true scaffold_9: 46190175-46199123 Setaria italica
Seita.9G402000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46198624-46199123 Setaria italica
Seita.9G402000 0.5kb downstream 0.5kb downstream 8949 true scaffold_9: 46189675-46198623 Setaria italica
Seita.9G402000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46189675-46190174 Setaria italica
Seita.9G402000 1.0kb upstream 1.0kb upstream 9449 true scaffold_9: 46190175-46199623 Setaria italica
Seita.9G402000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46198624-46199623 Setaria italica
Seita.9G402000 1.0kb downstream 1.0kb downstream 9449 true scaffold_9: 46189175-46198623 Setaria italica
Seita.9G402000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46189175-46190174 Setaria italica
Seita.9G402000 2.0kb upstream 2.0kb upstream 10449 true scaffold_9: 46190175-46200623 Setaria italica
Seita.9G402000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46198624-46200623 Setaria italica
Seita.9G402000 2.0kb downstream 2.0kb downstream 10449 true scaffold_9: 46188175-46198623 Setaria italica
Seita.9G402000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46188175-46190174 Setaria italica
Seita.9G402000 5.0kb upstream 5.0kb upstream 13449 true scaffold_9: 46190175-46203623 Setaria italica
Seita.9G402000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46198624-46203623 Setaria italica
Seita.9G402000 5.0kb downstream 5.0kb downstream 13449 true scaffold_9: 46185175-46198623 Setaria italica
Seita.9G402000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46185175-46190174 Setaria italica
Seita.9G402000 10.0kb upstream 10.0kb upstream 18449 true scaffold_9: 46190175-46208623 Setaria italica
Seita.9G402000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46198624-46208623 Setaria italica
Seita.9G402000 10.0kb downstream 10.0kb downstream 18449 true scaffold_9: 46180175-46198623 Setaria italica
Seita.9G402000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46180175-46190174 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041503 5273 Angiosperm View MSA
122191301 5267 Panicoideae View MSA
124580069 5269 Grass View MSA
121347582 5274 Embryophyte View MSA
123426889 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.131       High
cufflinks 2.12       High
cufflinks 0.914       Low
cufflinks 1.02        
cufflinks 1.026        
cufflinks 1.969        
cufflinks 1.46        
cufflinks 1.264        
cufflinks 1.392        
cufflinks 0.93       Low
cufflinks 1.451        
cufflinks 1.856        
cufflinks 0.867       Low
cufflinks 1.343        
cufflinks 1.98        
cufflinks 1.581        
cufflinks 2.248       High
cufflinks 1.871        
cufflinks 0.803       Low
cufflinks 1.672        

0 Strain