Gene : Seita.9G325500 S. italica v2.2
Defline:  (1 of 2) PTHR13162 - CCR4-NOT TRANSCRIPTION COMPLEX Genomic Order:  3255
Name:  ? Seita.9G325500 Secondary Identifier:  ? PAC:32687344
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G325500 0.5kb upstream 0.5kb upstream 19848 true scaffold_9: 37726646-37746493 Setaria italica
Seita.9G325500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 37726646-37727145 Setaria italica
Seita.9G325500 0.5kb downstream 0.5kb downstream 19848 true scaffold_9: 37727146-37746993 Setaria italica
Seita.9G325500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 37746494-37746993 Setaria italica
Seita.9G325500 1.0kb upstream 1.0kb upstream 20348 true scaffold_9: 37726146-37746493 Setaria italica
Seita.9G325500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 37726146-37727145 Setaria italica
Seita.9G325500 1.0kb downstream 1.0kb downstream 20348 true scaffold_9: 37727146-37747493 Setaria italica
Seita.9G325500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 37746494-37747493 Setaria italica
Seita.9G325500 2.0kb upstream 2.0kb upstream 21348 true scaffold_9: 37725146-37746493 Setaria italica
Seita.9G325500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 37725146-37727145 Setaria italica
Seita.9G325500 2.0kb downstream 2.0kb downstream 21348 true scaffold_9: 37727146-37748493 Setaria italica
Seita.9G325500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 37746494-37748493 Setaria italica
Seita.9G325500 5.0kb upstream 5.0kb upstream 24348 true scaffold_9: 37722146-37746493 Setaria italica
Seita.9G325500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 37722146-37727145 Setaria italica
Seita.9G325500 5.0kb downstream 5.0kb downstream 24348 true scaffold_9: 37727146-37751493 Setaria italica
Seita.9G325500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 37746494-37751493 Setaria italica
Seita.9G325500 10.0kb upstream 10.0kb upstream 29348 true scaffold_9: 37717146-37746493 Setaria italica
Seita.9G325500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 37717146-37727145 Setaria italica
Seita.9G325500 10.0kb downstream 10.0kb downstream 29348 true scaffold_9: 37727146-37756493 Setaria italica
Seita.9G325500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 37746494-37756493 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197302 5267 Panicoideae View MSA
124585691 5269 Grass View MSA
122047484 5273 Angiosperm View MSA
121349285 5274 Embryophyte View MSA
123428109 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.102       High
cufflinks 8.484        
cufflinks 12.335     High High
cufflinks 9.335        
cufflinks 6.529        
cufflinks 8.357        
cufflinks 8.258        
cufflinks 4.696       Low
cufflinks 5.324       Low
cufflinks 5.023       Low
cufflinks 9.122        
cufflinks 5.874        
cufflinks 6.234        
cufflinks 7.764        
cufflinks 7.537        
cufflinks 11.582       High
cufflinks 4.43       Low
cufflinks 13.629     High High
cufflinks 7.067        
cufflinks 5.363       Low

0 Strain