Gene : Seita.9G344900 S. italica v2.2
Defline:  (1 of 1) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Genomic Order:  3449
Name:  ? Seita.9G344900 Secondary Identifier:  ? PAC:32687714
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6441 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G344900 0.5kb upstream 0.5kb upstream 12196 true scaffold_9: 40495834-40508029 Setaria italica
Seita.9G344900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 40507530-40508029 Setaria italica
Seita.9G344900 0.5kb downstream 0.5kb downstream 12196 true scaffold_9: 40495334-40507529 Setaria italica
Seita.9G344900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 40495334-40495833 Setaria italica
Seita.9G344900 1.0kb upstream 1.0kb upstream 12696 true scaffold_9: 40495834-40508529 Setaria italica
Seita.9G344900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 40507530-40508529 Setaria italica
Seita.9G344900 1.0kb downstream 1.0kb downstream 12696 true scaffold_9: 40494834-40507529 Setaria italica
Seita.9G344900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 40494834-40495833 Setaria italica
Seita.9G344900 2.0kb upstream 2.0kb upstream 13696 true scaffold_9: 40495834-40509529 Setaria italica
Seita.9G344900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 40507530-40509529 Setaria italica
Seita.9G344900 2.0kb downstream 2.0kb downstream 13696 true scaffold_9: 40493834-40507529 Setaria italica
Seita.9G344900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 40493834-40495833 Setaria italica
Seita.9G344900 5.0kb upstream 5.0kb upstream 16696 true scaffold_9: 40495834-40512529 Setaria italica
Seita.9G344900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 40507530-40512529 Setaria italica
Seita.9G344900 5.0kb downstream 5.0kb downstream 16696 true scaffold_9: 40490834-40507529 Setaria italica
Seita.9G344900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 40490834-40495833 Setaria italica
Seita.9G344900 10.0kb upstream 10.0kb upstream 21696 true scaffold_9: 40495834-40517529 Setaria italica
Seita.9G344900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 40507530-40517529 Setaria italica
Seita.9G344900 10.0kb downstream 10.0kb downstream 21696 true scaffold_9: 40485834-40507529 Setaria italica
Seita.9G344900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 40485834-40495833 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186700 5267 Panicoideae View MSA
124576158 5269 Grass View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.691       High
cufflinks 2.962       High
cufflinks 1.842        
cufflinks 1.352       Low
cufflinks 1.4        
cufflinks 2.887       High
cufflinks 2.159        
cufflinks 1.377        
cufflinks 1.703        
cufflinks 0.982       Low
cufflinks 2.075        
cufflinks 1.713        
cufflinks 1.687        
cufflinks 1.883        
cufflinks 2.227        
cufflinks 2.595       High
cufflinks 1.442        
cufflinks 2.735       High
cufflinks 1.266       Low
cufflinks 1.673        

0 Strain