Gene : Seita.9G354600 S. italica v2.2
Defline:  (1 of 2) 2.7.9.1 - Pyruvate, phosphate dikinase / Pyruvate,phosphate dikinase Genomic Order:  3546
Name:  ? Seita.9G354600 Secondary Identifier:  ? PAC:32689023
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-241 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G354600 0.5kb upstream 0.5kb upstream 8577 true scaffold_9: 41400805-41409381 Setaria italica
Seita.9G354600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 41400805-41401304 Setaria italica
Seita.9G354600 0.5kb downstream 0.5kb downstream 8577 true scaffold_9: 41401305-41409881 Setaria italica
Seita.9G354600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 41409382-41409881 Setaria italica
Seita.9G354600 1.0kb upstream 1.0kb upstream 9077 true scaffold_9: 41400305-41409381 Setaria italica
Seita.9G354600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 41400305-41401304 Setaria italica
Seita.9G354600 1.0kb downstream 1.0kb downstream 9077 true scaffold_9: 41401305-41410381 Setaria italica
Seita.9G354600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 41409382-41410381 Setaria italica
Seita.9G354600 2.0kb upstream 2.0kb upstream 10077 true scaffold_9: 41399305-41409381 Setaria italica
Seita.9G354600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 41399305-41401304 Setaria italica
Seita.9G354600 2.0kb downstream 2.0kb downstream 10077 true scaffold_9: 41401305-41411381 Setaria italica
Seita.9G354600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 41409382-41411381 Setaria italica
Seita.9G354600 5.0kb upstream 5.0kb upstream 13077 true scaffold_9: 41396305-41409381 Setaria italica
Seita.9G354600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 41396305-41401304 Setaria italica
Seita.9G354600 5.0kb downstream 5.0kb downstream 13077 true scaffold_9: 41401305-41414381 Setaria italica
Seita.9G354600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 41409382-41414381 Setaria italica
Seita.9G354600 10.0kb upstream 10.0kb upstream 18077 true scaffold_9: 41391305-41409381 Setaria italica
Seita.9G354600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 41391305-41401304 Setaria italica
Seita.9G354600 10.0kb downstream 10.0kb downstream 18077 true scaffold_9: 41401305-41419381 Setaria italica
Seita.9G354600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 41409382-41419381 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191982 5267 Panicoideae View MSA
124580317 5269 Grass View MSA
122045986 5273 Angiosperm View MSA
121345134 5274 Embryophyte View MSA
123425418 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.157       High
cufflinks 2.037        
cufflinks 1.083        
cufflinks 0.78       Low
cufflinks 0.745       Low
cufflinks 1.599        
cufflinks 2.243        
cufflinks 1.11        
cufflinks 0.981        
cufflinks 0.575       Low
cufflinks 1.735        
cufflinks 1.483        
cufflinks 1.436        
cufflinks 1.142        
cufflinks 2.045        
cufflinks 2.903       High
cufflinks 1.37        
cufflinks 5.543       High
cufflinks 0.791       Low
cufflinks 1.293        

0 Strain