Gene : Seita.9G360200 S. italica v2.2
Defline:  (1 of 1) PTHR13931 - UBIQUITINATION FACTOR E4 Genomic Order:  3602
Name:  ? Seita.9G360200 Secondary Identifier:  ? PAC:32692437
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G360200 0.5kb upstream 0.5kb upstream 8304 true scaffold_9: 42126042-42134345 Setaria italica
Seita.9G360200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 42133846-42134345 Setaria italica
Seita.9G360200 0.5kb downstream 0.5kb downstream 8304 true scaffold_9: 42125542-42133845 Setaria italica
Seita.9G360200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 42125542-42126041 Setaria italica
Seita.9G360200 1.0kb upstream 1.0kb upstream 8804 true scaffold_9: 42126042-42134845 Setaria italica
Seita.9G360200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 42133846-42134845 Setaria italica
Seita.9G360200 1.0kb downstream 1.0kb downstream 8804 true scaffold_9: 42125042-42133845 Setaria italica
Seita.9G360200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 42125042-42126041 Setaria italica
Seita.9G360200 2.0kb upstream 2.0kb upstream 9804 true scaffold_9: 42126042-42135845 Setaria italica
Seita.9G360200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 42133846-42135845 Setaria italica
Seita.9G360200 2.0kb downstream 2.0kb downstream 9804 true scaffold_9: 42124042-42133845 Setaria italica
Seita.9G360200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 42124042-42126041 Setaria italica
Seita.9G360200 5.0kb upstream 5.0kb upstream 12804 true scaffold_9: 42126042-42138845 Setaria italica
Seita.9G360200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 42133846-42138845 Setaria italica
Seita.9G360200 5.0kb downstream 5.0kb downstream 12804 true scaffold_9: 42121042-42133845 Setaria italica
Seita.9G360200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 42121042-42126041 Setaria italica
Seita.9G360200 10.0kb upstream 10.0kb upstream 17804 true scaffold_9: 42126042-42143845 Setaria italica
Seita.9G360200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 42133846-42143845 Setaria italica
Seita.9G360200 10.0kb downstream 10.0kb downstream 17804 true scaffold_9: 42116042-42133845 Setaria italica
Seita.9G360200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 42116042-42126041 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176365 5267 Panicoideae View MSA
124586900 5269 Grass View MSA
122042023 5273 Angiosperm View MSA
121344944 5274 Embryophyte View MSA
123426697 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.702        
cufflinks 11.996        
cufflinks 13.856     High  
cufflinks 11.975     High  
cufflinks 10.017       Low
cufflinks 11.935        
cufflinks 12.0        
cufflinks 9.916       Low
cufflinks 8.972       Low
cufflinks 10.219       Low
cufflinks 14.318     High  
cufflinks 14.554     High High
cufflinks 14.357     High  
cufflinks 11.882        
cufflinks 16.996     High High
cufflinks 10.224       Low
cufflinks 13.151        
cufflinks 13.672     High  
cufflinks 11.149        
cufflinks 14.97     High High

0 Strain