Gene : Seita.9G362300 S. italica v2.2
Defline:  (1 of 1) PTHR14190:SF7 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 52 HOMOLOG Genomic Order:  3623
Name:  ? Seita.9G362300 Secondary Identifier:  ? PAC:32690948
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G362300 0.5kb upstream 0.5kb upstream 9773 true scaffold_9: 42309881-42319653 Setaria italica
Seita.9G362300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 42319154-42319653 Setaria italica
Seita.9G362300 0.5kb downstream 0.5kb downstream 9773 true scaffold_9: 42309381-42319153 Setaria italica
Seita.9G362300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 42309381-42309880 Setaria italica
Seita.9G362300 1.0kb upstream 1.0kb upstream 10273 true scaffold_9: 42309881-42320153 Setaria italica
Seita.9G362300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 42319154-42320153 Setaria italica
Seita.9G362300 1.0kb downstream 1.0kb downstream 10273 true scaffold_9: 42308881-42319153 Setaria italica
Seita.9G362300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 42308881-42309880 Setaria italica
Seita.9G362300 2.0kb upstream 2.0kb upstream 11273 true scaffold_9: 42309881-42321153 Setaria italica
Seita.9G362300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 42319154-42321153 Setaria italica
Seita.9G362300 2.0kb downstream 2.0kb downstream 11273 true scaffold_9: 42307881-42319153 Setaria italica
Seita.9G362300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 42307881-42309880 Setaria italica
Seita.9G362300 5.0kb upstream 5.0kb upstream 14273 true scaffold_9: 42309881-42324153 Setaria italica
Seita.9G362300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 42319154-42324153 Setaria italica
Seita.9G362300 5.0kb downstream 5.0kb downstream 14273 true scaffold_9: 42304881-42319153 Setaria italica
Seita.9G362300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 42304881-42309880 Setaria italica
Seita.9G362300 10.0kb upstream 10.0kb upstream 19273 true scaffold_9: 42309881-42329153 Setaria italica
Seita.9G362300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 42319154-42329153 Setaria italica
Seita.9G362300 10.0kb downstream 10.0kb downstream 19273 true scaffold_9: 42299881-42319153 Setaria italica
Seita.9G362300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 42299881-42309880 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188797 5267 Panicoideae View MSA
124575507 5269 Grass View MSA
122043794 5273 Angiosperm View MSA
121345189 5274 Embryophyte View MSA
123425999 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.851       High
cufflinks 9.974       High
cufflinks 4.761        
cufflinks 3.248       Low
cufflinks 2.864       Low
cufflinks 9.899       High
cufflinks 6.306        
cufflinks 7.674        
cufflinks 4.822        
cufflinks 5.817        
cufflinks 8.926        
cufflinks 8.117        
cufflinks 7.298        
cufflinks 4.924        
cufflinks 9.1        
cufflinks 6.468        
cufflinks 8.274        
cufflinks 6.009        
cufflinks 4.183       Low
cufflinks 8.999        

0 Strain