Gene : Seita.9G442400 S. italica v2.2
Defline:  (1 of 1) PTHR16127 - TAXILIN Genomic Order:  4424
Name:  ? Seita.9G442400 Secondary Identifier:  ? PAC:32692213
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G442400 0.5kb upstream 0.5kb upstream 3913 true scaffold_9: 49332586-49336498 Setaria italica
Seita.9G442400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49335999-49336498 Setaria italica
Seita.9G442400 0.5kb downstream 0.5kb downstream 3913 true scaffold_9: 49332086-49335998 Setaria italica
Seita.9G442400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49332086-49332585 Setaria italica
Seita.9G442400 1.0kb upstream 1.0kb upstream 4413 true scaffold_9: 49332586-49336998 Setaria italica
Seita.9G442400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49335999-49336998 Setaria italica
Seita.9G442400 1.0kb downstream 1.0kb downstream 4413 true scaffold_9: 49331586-49335998 Setaria italica
Seita.9G442400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49331586-49332585 Setaria italica
Seita.9G442400 2.0kb upstream 2.0kb upstream 5413 true scaffold_9: 49332586-49337998 Setaria italica
Seita.9G442400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49335999-49337998 Setaria italica
Seita.9G442400 2.0kb downstream 2.0kb downstream 5413 true scaffold_9: 49330586-49335998 Setaria italica
Seita.9G442400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49330586-49332585 Setaria italica
Seita.9G442400 5.0kb upstream 5.0kb upstream 8413 true scaffold_9: 49332586-49340998 Setaria italica
Seita.9G442400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49335999-49340998 Setaria italica
Seita.9G442400 5.0kb downstream 5.0kb downstream 8413 true scaffold_9: 49327586-49335998 Setaria italica
Seita.9G442400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49327586-49332585 Setaria italica
Seita.9G442400 10.0kb upstream 10.0kb upstream 13413 true scaffold_9: 49332586-49345998 Setaria italica
Seita.9G442400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49335999-49345998 Setaria italica
Seita.9G442400 10.0kb downstream 10.0kb downstream 13413 true scaffold_9: 49322586-49335998 Setaria italica
Seita.9G442400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49322586-49332585 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195665 5267 Panicoideae View MSA
124573125 5269 Grass View MSA
122042784 5273 Angiosperm View MSA
121348664 5274 Embryophyte View MSA
123425640 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.601        
cufflinks 10.214        
cufflinks 12.368     High  
cufflinks 15.943     High High
cufflinks 11.508     High  
cufflinks 11.274        
cufflinks 7.181       Low
cufflinks 12.283        
cufflinks 7.437       Low
cufflinks 12.593        
cufflinks 9.777        
cufflinks 15.855     High High
cufflinks 13.128        
cufflinks 8.476       Low
cufflinks 10.216        
cufflinks 9.391        
cufflinks 13.05        
cufflinks 22.505     High High
cufflinks 9.96        
cufflinks 11.52        

0 Strain