Gene : Seita.9G457500 S. italica v2.2
Defline:  (1 of 4) PF14604 - Variant SH3 domain (SH3_9) Genomic Order:  4575
Name:  ? Seita.9G457500 Secondary Identifier:  ? PAC:32690035
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G457500 0.5kb upstream 0.5kb upstream 10694 true scaffold_9: 50416877-50427570 Setaria italica
Seita.9G457500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50416877-50417376 Setaria italica
Seita.9G457500 0.5kb downstream 0.5kb downstream 10694 true scaffold_9: 50417377-50428070 Setaria italica
Seita.9G457500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50427571-50428070 Setaria italica
Seita.9G457500 1.0kb upstream 1.0kb upstream 11194 true scaffold_9: 50416377-50427570 Setaria italica
Seita.9G457500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50416377-50417376 Setaria italica
Seita.9G457500 1.0kb downstream 1.0kb downstream 11194 true scaffold_9: 50417377-50428570 Setaria italica
Seita.9G457500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50427571-50428570 Setaria italica
Seita.9G457500 2.0kb upstream 2.0kb upstream 12194 true scaffold_9: 50415377-50427570 Setaria italica
Seita.9G457500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50415377-50417376 Setaria italica
Seita.9G457500 2.0kb downstream 2.0kb downstream 12194 true scaffold_9: 50417377-50429570 Setaria italica
Seita.9G457500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50427571-50429570 Setaria italica
Seita.9G457500 5.0kb upstream 5.0kb upstream 15194 true scaffold_9: 50412377-50427570 Setaria italica
Seita.9G457500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50412377-50417376 Setaria italica
Seita.9G457500 5.0kb downstream 5.0kb downstream 15194 true scaffold_9: 50417377-50432570 Setaria italica
Seita.9G457500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50427571-50432570 Setaria italica
Seita.9G457500 10.0kb upstream 10.0kb upstream 20194 true scaffold_9: 50407377-50427570 Setaria italica
Seita.9G457500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50407377-50417376 Setaria italica
Seita.9G457500 10.0kb downstream 10.0kb downstream 20194 true scaffold_9: 50417377-50437570 Setaria italica
Seita.9G457500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50427571-50437570 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186456 5267 Panicoideae View MSA
124581818 5269 Grass View MSA
122044130 5273 Angiosperm View MSA
121348962 5274 Embryophyte View MSA
123428583 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.394     High High
cufflinks 19.898     High High
cufflinks 10.889     High  
cufflinks 9.998       Low
cufflinks 8.105       Low
cufflinks 17.398     High  
cufflinks 16.179     High  
cufflinks 11.334        
cufflinks 11.822        
cufflinks 13.167        
cufflinks 21.996     High High
cufflinks 15.244     High  
cufflinks 14.434     High  
cufflinks 9.362       Low
cufflinks 19.126     High  
cufflinks 16.173     High  
cufflinks 12.521        
cufflinks 20.338     High High
cufflinks 9.894       Low
cufflinks 16.334     High  

0 Strain