Gene : Seita.9G469900 S. italica v2.2
Defline:  (1 of 1) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  4699
Name:  ? Seita.9G469900 Secondary Identifier:  ? PAC:32687455
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G469900 0.5kb upstream 0.5kb upstream 5538 true scaffold_9: 51251382-51256919 Setaria italica
Seita.9G469900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51251382-51251881 Setaria italica
Seita.9G469900 0.5kb downstream 0.5kb downstream 5538 true scaffold_9: 51251882-51257419 Setaria italica
Seita.9G469900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51256920-51257419 Setaria italica
Seita.9G469900 1.0kb upstream 1.0kb upstream 6038 true scaffold_9: 51250882-51256919 Setaria italica
Seita.9G469900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51250882-51251881 Setaria italica
Seita.9G469900 1.0kb downstream 1.0kb downstream 6038 true scaffold_9: 51251882-51257919 Setaria italica
Seita.9G469900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51256920-51257919 Setaria italica
Seita.9G469900 2.0kb upstream 2.0kb upstream 7038 true scaffold_9: 51249882-51256919 Setaria italica
Seita.9G469900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51249882-51251881 Setaria italica
Seita.9G469900 2.0kb downstream 2.0kb downstream 7038 true scaffold_9: 51251882-51258919 Setaria italica
Seita.9G469900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51256920-51258919 Setaria italica
Seita.9G469900 5.0kb upstream 5.0kb upstream 10038 true scaffold_9: 51246882-51256919 Setaria italica
Seita.9G469900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51246882-51251881 Setaria italica
Seita.9G469900 5.0kb downstream 5.0kb downstream 10038 true scaffold_9: 51251882-51261919 Setaria italica
Seita.9G469900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51256920-51261919 Setaria italica
Seita.9G469900 10.0kb upstream 10.0kb upstream 15038 true scaffold_9: 51241882-51256919 Setaria italica
Seita.9G469900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51241882-51251881 Setaria italica
Seita.9G469900 10.0kb downstream 10.0kb downstream 15038 true scaffold_9: 51251882-51266919 Setaria italica
Seita.9G469900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51256920-51266919 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195600 5267 Panicoideae View MSA
124569271 5269 Grass View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.021        
cufflinks 5.35        
cufflinks 3.8        
cufflinks 2.516       Low
cufflinks 6.507        
cufflinks 6.494        
cufflinks 9.755        
cufflinks 17.889     High High
cufflinks 23.057     High High
cufflinks 7.948        
cufflinks 4.843        
cufflinks 2.302       Low
cufflinks 2.531       Low
cufflinks 7.208        
cufflinks 2.669        
cufflinks 6.063        
cufflinks 3.303        
cufflinks 4.792        
cufflinks 2.322       Low
cufflinks 2.667        

0 Strain