Gene : Seita.9G474800 S. italica v2.2
Defline:  (1 of 1) PTHR31062:SF44 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED Genomic Order:  4748
Name:  ? Seita.9G474800 Secondary Identifier:  ? PAC:32686560
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G474800 0.5kb upstream 0.5kb upstream 6059 true scaffold_9: 51617004-51623062 Setaria italica
Seita.9G474800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51617004-51617503 Setaria italica
Seita.9G474800 0.5kb downstream 0.5kb downstream 6059 true scaffold_9: 51617504-51623562 Setaria italica
Seita.9G474800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51623063-51623562 Setaria italica
Seita.9G474800 1.0kb upstream 1.0kb upstream 6559 true scaffold_9: 51616504-51623062 Setaria italica
Seita.9G474800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51616504-51617503 Setaria italica
Seita.9G474800 1.0kb downstream 1.0kb downstream 6559 true scaffold_9: 51617504-51624062 Setaria italica
Seita.9G474800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51623063-51624062 Setaria italica
Seita.9G474800 2.0kb upstream 2.0kb upstream 7559 true scaffold_9: 51615504-51623062 Setaria italica
Seita.9G474800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51615504-51617503 Setaria italica
Seita.9G474800 2.0kb downstream 2.0kb downstream 7559 true scaffold_9: 51617504-51625062 Setaria italica
Seita.9G474800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51623063-51625062 Setaria italica
Seita.9G474800 5.0kb upstream 5.0kb upstream 10559 true scaffold_9: 51612504-51623062 Setaria italica
Seita.9G474800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51612504-51617503 Setaria italica
Seita.9G474800 5.0kb downstream 5.0kb downstream 10559 true scaffold_9: 51617504-51628062 Setaria italica
Seita.9G474800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51623063-51628062 Setaria italica
Seita.9G474800 10.0kb upstream 10.0kb upstream 15559 true scaffold_9: 51607504-51623062 Setaria italica
Seita.9G474800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51607504-51617503 Setaria italica
Seita.9G474800 10.0kb downstream 10.0kb downstream 15559 true scaffold_9: 51617504-51633062 Setaria italica
Seita.9G474800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51623063-51633062 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178168 5267 Panicoideae View MSA
124580875 5269 Grass View MSA
122049542 5273 Angiosperm View MSA
121347970 5274 Embryophyte View MSA
123380694 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.707        
cufflinks 3.489       High
cufflinks 0.096       Low
cufflinks 0.132       Low
cufflinks 0.25        
cufflinks 3.89       High
cufflinks 1.436        
cufflinks 1.06        
cufflinks 1.156        
cufflinks 3.213       High
cufflinks 1.507        
cufflinks 0.432        
cufflinks 0.294        
cufflinks 0.28        
cufflinks 0.232        
cufflinks 0.891        
cufflinks 0.252        
cufflinks 0.509        
cufflinks 0.063     Low Low
cufflinks 0.298        

0 Strain