Gene : Seita.9G476700 S. italica v2.2
Defline:  (1 of 2) PTHR11999//PTHR11999:SF86 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE Genomic Order:  4767
Name:  ? Seita.9G476700 Secondary Identifier:  ? PAC:32688818
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1305 Setaria italica pathologic  
Sitalica PWY-4321 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G476700 0.5kb upstream 0.5kb upstream 3509 true scaffold_9: 51753752-51757260 Setaria italica
Seita.9G476700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 51756761-51757260 Setaria italica
Seita.9G476700 0.5kb downstream 0.5kb downstream 3509 true scaffold_9: 51753252-51756760 Setaria italica
Seita.9G476700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 51753252-51753751 Setaria italica
Seita.9G476700 1.0kb upstream 1.0kb upstream 4009 true scaffold_9: 51753752-51757760 Setaria italica
Seita.9G476700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 51756761-51757760 Setaria italica
Seita.9G476700 1.0kb downstream 1.0kb downstream 4009 true scaffold_9: 51752752-51756760 Setaria italica
Seita.9G476700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 51752752-51753751 Setaria italica
Seita.9G476700 2.0kb upstream 2.0kb upstream 5009 true scaffold_9: 51753752-51758760 Setaria italica
Seita.9G476700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 51756761-51758760 Setaria italica
Seita.9G476700 2.0kb downstream 2.0kb downstream 5009 true scaffold_9: 51751752-51756760 Setaria italica
Seita.9G476700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 51751752-51753751 Setaria italica
Seita.9G476700 5.0kb upstream 5.0kb upstream 8009 true scaffold_9: 51753752-51761760 Setaria italica
Seita.9G476700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 51756761-51761760 Setaria italica
Seita.9G476700 5.0kb downstream 5.0kb downstream 8009 true scaffold_9: 51748752-51756760 Setaria italica
Seita.9G476700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 51748752-51753751 Setaria italica
Seita.9G476700 10.0kb upstream 10.0kb upstream 13009 true scaffold_9: 51753752-51766760 Setaria italica
Seita.9G476700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 51756761-51766760 Setaria italica
Seita.9G476700 10.0kb downstream 10.0kb downstream 13009 true scaffold_9: 51743752-51756760 Setaria italica
Seita.9G476700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 51743752-51753751 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180093 5267 Panicoideae View MSA
124580805 5269 Grass View MSA
122047192 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.816        
cufflinks 0.448        
cufflinks 0.104       Low
cufflinks 0.047     Low Low
cufflinks 0.997        
cufflinks 0.426        
cufflinks 0.529        
cufflinks 0.881        
cufflinks 5.136       High
cufflinks 2.21        
cufflinks 2.413        
cufflinks 3.327       High
cufflinks 0.466        
cufflinks 2.612       High
cufflinks 1.048        
cufflinks 0.225       Low
cufflinks 1.789        
cufflinks 0.228       Low
cufflinks 0.552        
cufflinks 0.801        

0 Strain