Gene : Seita.9G412400 S. italica v2.2
Defline:  (1 of 1) PTHR10994:SF67 - RETICULON-LIKE PROTEIN B16 Genomic Order:  4124
Name:  ? Seita.9G412400 Secondary Identifier:  ? PAC:32687798
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G412400 0.5kb upstream 0.5kb upstream 2837 true scaffold_9: 47040262-47043098 Setaria italica
Seita.9G412400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47040262-47040761 Setaria italica
Seita.9G412400 0.5kb downstream 0.5kb downstream 2837 true scaffold_9: 47040762-47043598 Setaria italica
Seita.9G412400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47043099-47043598 Setaria italica
Seita.9G412400 1.0kb upstream 1.0kb upstream 3337 true scaffold_9: 47039762-47043098 Setaria italica
Seita.9G412400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47039762-47040761 Setaria italica
Seita.9G412400 1.0kb downstream 1.0kb downstream 3337 true scaffold_9: 47040762-47044098 Setaria italica
Seita.9G412400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47043099-47044098 Setaria italica
Seita.9G412400 2.0kb upstream 2.0kb upstream 4337 true scaffold_9: 47038762-47043098 Setaria italica
Seita.9G412400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47038762-47040761 Setaria italica
Seita.9G412400 2.0kb downstream 2.0kb downstream 4337 true scaffold_9: 47040762-47045098 Setaria italica
Seita.9G412400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47043099-47045098 Setaria italica
Seita.9G412400 5.0kb upstream 5.0kb upstream 7337 true scaffold_9: 47035762-47043098 Setaria italica
Seita.9G412400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47035762-47040761 Setaria italica
Seita.9G412400 5.0kb downstream 5.0kb downstream 7337 true scaffold_9: 47040762-47048098 Setaria italica
Seita.9G412400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47043099-47048098 Setaria italica
Seita.9G412400 10.0kb upstream 10.0kb upstream 12337 true scaffold_9: 47030762-47043098 Setaria italica
Seita.9G412400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47030762-47040761 Setaria italica
Seita.9G412400 10.0kb downstream 10.0kb downstream 12337 true scaffold_9: 47040762-47053098 Setaria italica
Seita.9G412400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47043099-47053098 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187232 5267 Panicoideae View MSA
124569543 5269 Grass View MSA
122047418 5273 Angiosperm View MSA
123429002 5275 Viridiplantae View MSA
121351639 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.914        
cufflinks 1.747       Low
cufflinks 1.512       Low
cufflinks 2.313        
cufflinks 2.372        
cufflinks 1.634       Low
cufflinks 1.814       Low
cufflinks 2.782        
cufflinks 2.046        
cufflinks 3.911        
cufflinks 2.949        
cufflinks 6.288       High
cufflinks 4.378       High
cufflinks 2.187        
cufflinks 3.108        
cufflinks 2.462        
cufflinks 4.663       High
cufflinks 4.514       High
cufflinks 2.092        
cufflinks 3.289        

0 Strain