Gene : Seita.9G412600 S. italica v2.2
Defline:  (1 of 1) PTHR11851:SF123 - NARDILYSIN Genomic Order:  4126
Name:  ? Seita.9G412600 Secondary Identifier:  ? PAC:32692628
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G412600 0.5kb upstream 0.5kb upstream 12930 true scaffold_9: 47047562-47060491 Setaria italica
Seita.9G412600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47059992-47060491 Setaria italica
Seita.9G412600 0.5kb downstream 0.5kb downstream 12930 true scaffold_9: 47047062-47059991 Setaria italica
Seita.9G412600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47047062-47047561 Setaria italica
Seita.9G412600 1.0kb upstream 1.0kb upstream 13430 true scaffold_9: 47047562-47060991 Setaria italica
Seita.9G412600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47059992-47060991 Setaria italica
Seita.9G412600 1.0kb downstream 1.0kb downstream 13430 true scaffold_9: 47046562-47059991 Setaria italica
Seita.9G412600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47046562-47047561 Setaria italica
Seita.9G412600 2.0kb upstream 2.0kb upstream 14430 true scaffold_9: 47047562-47061991 Setaria italica
Seita.9G412600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47059992-47061991 Setaria italica
Seita.9G412600 2.0kb downstream 2.0kb downstream 14430 true scaffold_9: 47045562-47059991 Setaria italica
Seita.9G412600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47045562-47047561 Setaria italica
Seita.9G412600 5.0kb upstream 5.0kb upstream 17430 true scaffold_9: 47047562-47064991 Setaria italica
Seita.9G412600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47059992-47064991 Setaria italica
Seita.9G412600 5.0kb downstream 5.0kb downstream 17430 true scaffold_9: 47042562-47059991 Setaria italica
Seita.9G412600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47042562-47047561 Setaria italica
Seita.9G412600 10.0kb upstream 10.0kb upstream 22430 true scaffold_9: 47047562-47069991 Setaria italica
Seita.9G412600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47059992-47069991 Setaria italica
Seita.9G412600 10.0kb downstream 10.0kb downstream 22430 true scaffold_9: 47037562-47059991 Setaria italica
Seita.9G412600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47037562-47047561 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183956 5267 Panicoideae View MSA
124574291 5269 Grass View MSA
122043199 5273 Angiosperm View MSA
121346552 5274 Embryophyte View MSA
123428383 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.153       High
cufflinks 7.717        
cufflinks 7.204        
cufflinks 6.421        
cufflinks 4.859       Low
cufflinks 7.05        
cufflinks 5.2       Low
cufflinks 5.59        
cufflinks 7.103        
cufflinks 4.657       Low
cufflinks 8.895       High
cufflinks 8.452        
cufflinks 6.881        
cufflinks 5.489        
cufflinks 7.929        
cufflinks 6.038        
cufflinks 8.176        
cufflinks 6.739        
cufflinks 4.153       Low
cufflinks 9.836       High

0 Strain