Gene : Seita.9G413600 S. italica v2.2
Defline:  (1 of 21) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  4136
Name:  ? Seita.9G413600 Secondary Identifier:  ? PAC:32692681
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G413600 0.5kb upstream 0.5kb upstream 5164 true scaffold_9: 47135503-47140666 Setaria italica
Seita.9G413600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47140167-47140666 Setaria italica
Seita.9G413600 0.5kb downstream 0.5kb downstream 5164 true scaffold_9: 47135003-47140166 Setaria italica
Seita.9G413600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47135003-47135502 Setaria italica
Seita.9G413600 1.0kb upstream 1.0kb upstream 5664 true scaffold_9: 47135503-47141166 Setaria italica
Seita.9G413600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47140167-47141166 Setaria italica
Seita.9G413600 1.0kb downstream 1.0kb downstream 5664 true scaffold_9: 47134503-47140166 Setaria italica
Seita.9G413600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47134503-47135502 Setaria italica
Seita.9G413600 2.0kb upstream 2.0kb upstream 6664 true scaffold_9: 47135503-47142166 Setaria italica
Seita.9G413600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47140167-47142166 Setaria italica
Seita.9G413600 2.0kb downstream 2.0kb downstream 6664 true scaffold_9: 47133503-47140166 Setaria italica
Seita.9G413600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47133503-47135502 Setaria italica
Seita.9G413600 5.0kb upstream 5.0kb upstream 9664 true scaffold_9: 47135503-47145166 Setaria italica
Seita.9G413600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47140167-47145166 Setaria italica
Seita.9G413600 5.0kb downstream 5.0kb downstream 9664 true scaffold_9: 47130503-47140166 Setaria italica
Seita.9G413600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47130503-47135502 Setaria italica
Seita.9G413600 10.0kb upstream 10.0kb upstream 14664 true scaffold_9: 47135503-47150166 Setaria italica
Seita.9G413600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47140167-47150166 Setaria italica
Seita.9G413600 10.0kb downstream 10.0kb downstream 14664 true scaffold_9: 47125503-47140166 Setaria italica
Seita.9G413600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47125503-47135502 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196602 5267 Panicoideae View MSA
124585163 5269 Grass View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.719        
cufflinks 1.149       High
cufflinks 0.6        
cufflinks 0.348       Low
cufflinks 0.324       Low
cufflinks 0.935        
cufflinks 0.689        
cufflinks 0.574        
cufflinks 0.807        
cufflinks 0.289     Low Low
cufflinks 0.608        
cufflinks 0.823        
cufflinks 0.463        
cufflinks 1.115       High
cufflinks 0.706        
cufflinks 0.863        
cufflinks 0.903        
cufflinks 0.882        
cufflinks 0.282       Low
cufflinks 0.796        

0 Strain