Gene : Seita.9G424000 S. italica v2.2
Defline:  (1 of 1) PTHR10343//PTHR10343:SF55 - 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT Genomic Order:  4240
Name:  ? Seita.9G424000 Secondary Identifier:  ? PAC:32687082
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G424000 0.5kb upstream 0.5kb upstream 6379 true scaffold_9: 47959040-47965418 Setaria italica
Seita.9G424000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 47964919-47965418 Setaria italica
Seita.9G424000 0.5kb downstream 0.5kb downstream 6379 true scaffold_9: 47958540-47964918 Setaria italica
Seita.9G424000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 47958540-47959039 Setaria italica
Seita.9G424000 1.0kb upstream 1.0kb upstream 6879 true scaffold_9: 47959040-47965918 Setaria italica
Seita.9G424000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 47964919-47965918 Setaria italica
Seita.9G424000 1.0kb downstream 1.0kb downstream 6879 true scaffold_9: 47958040-47964918 Setaria italica
Seita.9G424000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 47958040-47959039 Setaria italica
Seita.9G424000 2.0kb upstream 2.0kb upstream 7879 true scaffold_9: 47959040-47966918 Setaria italica
Seita.9G424000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 47964919-47966918 Setaria italica
Seita.9G424000 2.0kb downstream 2.0kb downstream 7879 true scaffold_9: 47957040-47964918 Setaria italica
Seita.9G424000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 47957040-47959039 Setaria italica
Seita.9G424000 5.0kb upstream 5.0kb upstream 10879 true scaffold_9: 47959040-47969918 Setaria italica
Seita.9G424000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 47964919-47969918 Setaria italica
Seita.9G424000 5.0kb downstream 5.0kb downstream 10879 true scaffold_9: 47954040-47964918 Setaria italica
Seita.9G424000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 47954040-47959039 Setaria italica
Seita.9G424000 10.0kb upstream 10.0kb upstream 15879 true scaffold_9: 47959040-47974918 Setaria italica
Seita.9G424000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 47964919-47974918 Setaria italica
Seita.9G424000 10.0kb downstream 10.0kb downstream 15879 true scaffold_9: 47949040-47964918 Setaria italica
Seita.9G424000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 47949040-47959039 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187958 5267 Panicoideae View MSA
124570321 5269 Grass View MSA
122041753 5273 Angiosperm View MSA
121345261 5274 Embryophyte View MSA
123426874 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.787        
cufflinks 7.012       Low
cufflinks 8.084        
cufflinks 10.351        
cufflinks 9.378        
cufflinks 9.736        
cufflinks 7.309       Low
cufflinks 10.123        
cufflinks 9.095        
cufflinks 17.215     High High
cufflinks 10.539        
cufflinks 18.979     High High
cufflinks 19.751     High High
cufflinks 6.482       Low
cufflinks 10.587        
cufflinks 7.699       Low
cufflinks 18.565     High High
cufflinks 13.881     High  
cufflinks 10.02        
cufflinks 14.484     High  

0 Strain