Gene : Seita.9G427800 S. italica v2.2
Defline:  (1 of 1) PTHR24423:SF563 - PHYTOCHROME E Genomic Order:  4278
Name:  ? Seita.9G427800 Secondary Identifier:  ? PAC:32690168
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G427800 0.5kb upstream 0.5kb upstream 7439 true scaffold_9: 48306607-48314045 Setaria italica
Seita.9G427800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 48313546-48314045 Setaria italica
Seita.9G427800 0.5kb downstream 0.5kb downstream 7439 true scaffold_9: 48306107-48313545 Setaria italica
Seita.9G427800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 48306107-48306606 Setaria italica
Seita.9G427800 1.0kb upstream 1.0kb upstream 7939 true scaffold_9: 48306607-48314545 Setaria italica
Seita.9G427800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 48313546-48314545 Setaria italica
Seita.9G427800 1.0kb downstream 1.0kb downstream 7939 true scaffold_9: 48305607-48313545 Setaria italica
Seita.9G427800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 48305607-48306606 Setaria italica
Seita.9G427800 2.0kb upstream 2.0kb upstream 8939 true scaffold_9: 48306607-48315545 Setaria italica
Seita.9G427800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 48313546-48315545 Setaria italica
Seita.9G427800 2.0kb downstream 2.0kb downstream 8939 true scaffold_9: 48304607-48313545 Setaria italica
Seita.9G427800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 48304607-48306606 Setaria italica
Seita.9G427800 5.0kb upstream 5.0kb upstream 11939 true scaffold_9: 48306607-48318545 Setaria italica
Seita.9G427800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 48313546-48318545 Setaria italica
Seita.9G427800 5.0kb downstream 5.0kb downstream 11939 true scaffold_9: 48301607-48313545 Setaria italica
Seita.9G427800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 48301607-48306606 Setaria italica
Seita.9G427800 10.0kb upstream 10.0kb upstream 16939 true scaffold_9: 48306607-48323545 Setaria italica
Seita.9G427800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 48313546-48323545 Setaria italica
Seita.9G427800 10.0kb downstream 10.0kb downstream 16939 true scaffold_9: 48296607-48313545 Setaria italica
Seita.9G427800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 48296607-48306606 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181166 5267 Panicoideae View MSA
124570607 5269 Grass View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.47     High High
cufflinks 25.015     High  
cufflinks 47.115     High High
cufflinks 46.079     High High
cufflinks 42.423     High  
cufflinks 35.253     High  
cufflinks 19.621     High  
cufflinks 20.556     High  
cufflinks 30.81     High  
cufflinks 19.353     High  
cufflinks 29.335     High  
cufflinks 15.363     High Low
cufflinks 18.607     High  
cufflinks 21.384     High  
cufflinks 12.577       Low
cufflinks 48.721     High High
cufflinks 14.623     High Low
cufflinks 64.721     High High
cufflinks 25.673     High  
cufflinks 13.945       Low

0 Strain