Gene : Seita.9G441100 S. italica v2.2
Defline:  (1 of 1) PTHR32285:SF14 - PROTEIN PMR5-RELATED Genomic Order:  4411
Name:  ? Seita.9G441100 Secondary Identifier:  ? PAC:32687464
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G441100 0.5kb upstream 0.5kb upstream 2922 true scaffold_9: 49236202-49239123 Setaria italica
Seita.9G441100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49238624-49239123 Setaria italica
Seita.9G441100 0.5kb downstream 0.5kb downstream 2922 true scaffold_9: 49235702-49238623 Setaria italica
Seita.9G441100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49235702-49236201 Setaria italica
Seita.9G441100 1.0kb upstream 1.0kb upstream 3422 true scaffold_9: 49236202-49239623 Setaria italica
Seita.9G441100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49238624-49239623 Setaria italica
Seita.9G441100 1.0kb downstream 1.0kb downstream 3422 true scaffold_9: 49235202-49238623 Setaria italica
Seita.9G441100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49235202-49236201 Setaria italica
Seita.9G441100 2.0kb upstream 2.0kb upstream 4422 true scaffold_9: 49236202-49240623 Setaria italica
Seita.9G441100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49238624-49240623 Setaria italica
Seita.9G441100 2.0kb downstream 2.0kb downstream 4422 true scaffold_9: 49234202-49238623 Setaria italica
Seita.9G441100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49234202-49236201 Setaria italica
Seita.9G441100 5.0kb upstream 5.0kb upstream 7422 true scaffold_9: 49236202-49243623 Setaria italica
Seita.9G441100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49238624-49243623 Setaria italica
Seita.9G441100 5.0kb downstream 5.0kb downstream 7422 true scaffold_9: 49231202-49238623 Setaria italica
Seita.9G441100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49231202-49236201 Setaria italica
Seita.9G441100 10.0kb upstream 10.0kb upstream 12422 true scaffold_9: 49236202-49248623 Setaria italica
Seita.9G441100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49238624-49248623 Setaria italica
Seita.9G441100 10.0kb downstream 10.0kb downstream 12422 true scaffold_9: 49226202-49238623 Setaria italica
Seita.9G441100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49226202-49236201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187088 5267 Panicoideae View MSA
124589504 5269 Grass View MSA
122042931 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121310047 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.482        
cufflinks 0.902        
cufflinks 0.366       Low
cufflinks 0.925        
cufflinks 2.31        
cufflinks 1.574        
cufflinks 2.289        
cufflinks 2.504        
cufflinks 3.392        
cufflinks 12.866       High
cufflinks 6.234       High
cufflinks 1.474        
cufflinks 1.6        
cufflinks 1.038        
cufflinks 1.535        
cufflinks 1.537        
cufflinks 1.123        
cufflinks 0.875        
cufflinks 0.678       Low
cufflinks 2.378        

0 Strain