Gene : Seita.9G441700 S. italica v2.2
Defline:  (1 of 2) PTHR12231:SF111 - MATRIX-REMODELING-ASSOCIATED PROTEIN 8 Genomic Order:  4417
Name:  ? Seita.9G441700 Secondary Identifier:  ? PAC:32691437
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G441700 0.5kb upstream 0.5kb upstream 2106 true scaffold_9: 49295429-49297534 Setaria italica
Seita.9G441700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49297035-49297534 Setaria italica
Seita.9G441700 0.5kb downstream 0.5kb downstream 2106 true scaffold_9: 49294929-49297034 Setaria italica
Seita.9G441700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49294929-49295428 Setaria italica
Seita.9G441700 1.0kb upstream 1.0kb upstream 2606 true scaffold_9: 49295429-49298034 Setaria italica
Seita.9G441700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49297035-49298034 Setaria italica
Seita.9G441700 1.0kb downstream 1.0kb downstream 2606 true scaffold_9: 49294429-49297034 Setaria italica
Seita.9G441700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49294429-49295428 Setaria italica
Seita.9G441700 2.0kb upstream 2.0kb upstream 3606 true scaffold_9: 49295429-49299034 Setaria italica
Seita.9G441700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49297035-49299034 Setaria italica
Seita.9G441700 2.0kb downstream 2.0kb downstream 3606 true scaffold_9: 49293429-49297034 Setaria italica
Seita.9G441700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49293429-49295428 Setaria italica
Seita.9G441700 5.0kb upstream 5.0kb upstream 6606 true scaffold_9: 49295429-49302034 Setaria italica
Seita.9G441700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49297035-49302034 Setaria italica
Seita.9G441700 5.0kb downstream 5.0kb downstream 6606 true scaffold_9: 49290429-49297034 Setaria italica
Seita.9G441700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49290429-49295428 Setaria italica
Seita.9G441700 10.0kb upstream 10.0kb upstream 11606 true scaffold_9: 49295429-49307034 Setaria italica
Seita.9G441700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49297035-49307034 Setaria italica
Seita.9G441700 10.0kb downstream 10.0kb downstream 11606 true scaffold_9: 49285429-49297034 Setaria italica
Seita.9G441700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49285429-49295428 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175686 5267 Panicoideae View MSA
124572677 5269 Grass View MSA
122046008 5273 Angiosperm View MSA
121345069 5274 Embryophyte View MSA
123428656 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.947        
cufflinks 3.797        
cufflinks 6.142        
cufflinks 8.853        
cufflinks 12.289     High  
cufflinks 4.65        
cufflinks 10.358        
cufflinks 14.066     High High
cufflinks 19.161     High High
cufflinks 9.104        
cufflinks 1.853        
cufflinks 0.258       Low
cufflinks 0.622        
cufflinks 6.109        
cufflinks 0.094     Low Low
cufflinks 6.2        
cufflinks 0.518       Low
cufflinks 2.465        
cufflinks 4.081        
cufflinks 0.203       Low

0 Strain