Gene : Seita.9G519400 S. italica v2.2
Defline:  (1 of 1) PTHR10992:SF828 - ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  5194
Name:  ? Seita.9G519400 Secondary Identifier:  ? PAC:32688315
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPAS-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G519400 0.5kb upstream 0.5kb upstream 4633 true scaffold_9: 54876483-54881115 Setaria italica
Seita.9G519400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 54876483-54876982 Setaria italica
Seita.9G519400 0.5kb downstream 0.5kb downstream 4633 true scaffold_9: 54876983-54881615 Setaria italica
Seita.9G519400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 54881116-54881615 Setaria italica
Seita.9G519400 1.0kb upstream 1.0kb upstream 5133 true scaffold_9: 54875983-54881115 Setaria italica
Seita.9G519400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 54875983-54876982 Setaria italica
Seita.9G519400 1.0kb downstream 1.0kb downstream 5133 true scaffold_9: 54876983-54882115 Setaria italica
Seita.9G519400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 54881116-54882115 Setaria italica
Seita.9G519400 2.0kb upstream 2.0kb upstream 6133 true scaffold_9: 54874983-54881115 Setaria italica
Seita.9G519400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 54874983-54876982 Setaria italica
Seita.9G519400 2.0kb downstream 2.0kb downstream 6133 true scaffold_9: 54876983-54883115 Setaria italica
Seita.9G519400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 54881116-54883115 Setaria italica
Seita.9G519400 5.0kb upstream 5.0kb upstream 9133 true scaffold_9: 54871983-54881115 Setaria italica
Seita.9G519400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 54871983-54876982 Setaria italica
Seita.9G519400 5.0kb downstream 5.0kb downstream 9133 true scaffold_9: 54876983-54886115 Setaria italica
Seita.9G519400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 54881116-54886115 Setaria italica
Seita.9G519400 10.0kb upstream 10.0kb upstream 14133 true scaffold_9: 54866983-54881115 Setaria italica
Seita.9G519400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 54866983-54876982 Setaria italica
Seita.9G519400 10.0kb downstream 10.0kb downstream 14133 true scaffold_9: 54876983-54891115 Setaria italica
Seita.9G519400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 54881116-54891115 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026796 5273 Angiosperm View MSA
122176251 5267 Panicoideae View MSA
124568356 5269 Grass View MSA
123428977 5275 Viridiplantae View MSA
121351643 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.578        
cufflinks 0.086     Low Low
cufflinks 0.569        
cufflinks 0.619        
cufflinks 0.219        
cufflinks 0.085     Low Low
cufflinks 0.324        
cufflinks 0.646        
cufflinks 0.123       Low
cufflinks 2.214       High
cufflinks 0.905        
cufflinks 0.31        
cufflinks 0.437        
cufflinks 0.559        
cufflinks 0.402        
cufflinks 0.454        
cufflinks 0.5        
cufflinks 0.218        
cufflinks 1.317       High
cufflinks 0.548        

0 Strain