Gene : Seita.9G525300 S. italica v2.2
Defline:  (1 of 1) PTHR12899:SF8 - RIBOSOMAL L18P/L5E FAMILY PROTEIN Genomic Order:  5253
Name:  ? Seita.9G525300 Secondary Identifier:  ? PAC:32692977
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G525300 0.5kb upstream 0.5kb upstream 2513 true scaffold_9: 55261037-55263549 Setaria italica
Seita.9G525300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55261037-55261536 Setaria italica
Seita.9G525300 0.5kb downstream 0.5kb downstream 2513 true scaffold_9: 55261537-55264049 Setaria italica
Seita.9G525300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55263550-55264049 Setaria italica
Seita.9G525300 1.0kb upstream 1.0kb upstream 3013 true scaffold_9: 55260537-55263549 Setaria italica
Seita.9G525300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55260537-55261536 Setaria italica
Seita.9G525300 1.0kb downstream 1.0kb downstream 3013 true scaffold_9: 55261537-55264549 Setaria italica
Seita.9G525300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55263550-55264549 Setaria italica
Seita.9G525300 2.0kb upstream 2.0kb upstream 4013 true scaffold_9: 55259537-55263549 Setaria italica
Seita.9G525300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55259537-55261536 Setaria italica
Seita.9G525300 2.0kb downstream 2.0kb downstream 4013 true scaffold_9: 55261537-55265549 Setaria italica
Seita.9G525300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55263550-55265549 Setaria italica
Seita.9G525300 5.0kb upstream 5.0kb upstream 7013 true scaffold_9: 55256537-55263549 Setaria italica
Seita.9G525300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55256537-55261536 Setaria italica
Seita.9G525300 5.0kb downstream 5.0kb downstream 7013 true scaffold_9: 55261537-55268549 Setaria italica
Seita.9G525300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55263550-55268549 Setaria italica
Seita.9G525300 10.0kb upstream 10.0kb upstream 12013 true scaffold_9: 55251537-55263549 Setaria italica
Seita.9G525300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55251537-55261536 Setaria italica
Seita.9G525300 10.0kb downstream 10.0kb downstream 12013 true scaffold_9: 55261537-55273549 Setaria italica
Seita.9G525300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55263550-55273549 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180315 5267 Panicoideae View MSA
124589119 5269 Grass View MSA
122046996 5273 Angiosperm View MSA
121350781 5274 Embryophyte View MSA
123423914 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.94        
cufflinks 0.52        
cufflinks 0.428        
cufflinks 0.27       Low
cufflinks 0.319        
cufflinks 0.544        
cufflinks 0.873        
cufflinks 0.886        
cufflinks 0.991       High
cufflinks 1.335       High
cufflinks 0.542        
cufflinks 0.181       Low
cufflinks 0.334        
cufflinks 0.834        
cufflinks 0.226       Low
cufflinks 1.32       High
cufflinks 0.366        
cufflinks 1.045       High
cufflinks 0.282        
cufflinks 0.264       Low

0 Strain