Gene : Seita.9G524600 S. italica v2.2
Defline:  (1 of 1) 1.4.1.24 - 3-dehydroquinate synthase II / DHQ synthase II Genomic Order:  5246
Name:  ? Seita.9G524600 Secondary Identifier:  ? PAC:32693600
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G524600 0.5kb upstream 0.5kb upstream 3645 true scaffold_9: 55233173-55236817 Setaria italica
Seita.9G524600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55236318-55236817 Setaria italica
Seita.9G524600 0.5kb downstream 0.5kb downstream 3645 true scaffold_9: 55232673-55236317 Setaria italica
Seita.9G524600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55232673-55233172 Setaria italica
Seita.9G524600 1.0kb upstream 1.0kb upstream 4145 true scaffold_9: 55233173-55237317 Setaria italica
Seita.9G524600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55236318-55237317 Setaria italica
Seita.9G524600 1.0kb downstream 1.0kb downstream 4145 true scaffold_9: 55232173-55236317 Setaria italica
Seita.9G524600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55232173-55233172 Setaria italica
Seita.9G524600 2.0kb upstream 2.0kb upstream 5145 true scaffold_9: 55233173-55238317 Setaria italica
Seita.9G524600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55236318-55238317 Setaria italica
Seita.9G524600 2.0kb downstream 2.0kb downstream 5145 true scaffold_9: 55231173-55236317 Setaria italica
Seita.9G524600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55231173-55233172 Setaria italica
Seita.9G524600 5.0kb upstream 5.0kb upstream 8145 true scaffold_9: 55233173-55241317 Setaria italica
Seita.9G524600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55236318-55241317 Setaria italica
Seita.9G524600 5.0kb downstream 5.0kb downstream 8145 true scaffold_9: 55228173-55236317 Setaria italica
Seita.9G524600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55228173-55233172 Setaria italica
Seita.9G524600 10.0kb upstream 10.0kb upstream 13145 true scaffold_9: 55233173-55246317 Setaria italica
Seita.9G524600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55236318-55246317 Setaria italica
Seita.9G524600 10.0kb downstream 10.0kb downstream 13145 true scaffold_9: 55223173-55236317 Setaria italica
Seita.9G524600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55223173-55233172 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188195 5267 Panicoideae View MSA
124573834 5269 Grass View MSA
122045215 5273 Angiosperm View MSA
121347286 5274 Embryophyte View MSA
123427412 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.701       High
cufflinks 4.495       High
cufflinks 2.315        
cufflinks 1.823       Low
cufflinks 2.124       Low
cufflinks 3.59        
cufflinks 3.779        
cufflinks 4.017       High
cufflinks 3.216        
cufflinks 3.028        
cufflinks 3.27        
cufflinks 1.918       Low
cufflinks 2.119       Low
cufflinks 3.218        
cufflinks 2.693        
cufflinks 4.379       High
cufflinks 2.584        
cufflinks 2.671        
cufflinks 2.71        
cufflinks 2.434        

0 Strain