Gene : Seita.9G530800 S. italica v2.2
Defline:  (1 of 1) PTHR22912:SF135 - GLUTATHIONE REDUCTASE, CHLOROPLASTIC Genomic Order:  5308
Name:  ? Seita.9G530800 Secondary Identifier:  ? PAC:32690126
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLUT-REDOX-PWY Setaria italica pathologic  
Sitalica PWY-4081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G530800 0.5kb upstream 0.5kb upstream 3811 true scaffold_9: 55563713-55567523 Setaria italica
Seita.9G530800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55567024-55567523 Setaria italica
Seita.9G530800 0.5kb downstream 0.5kb downstream 3811 true scaffold_9: 55563213-55567023 Setaria italica
Seita.9G530800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55563213-55563712 Setaria italica
Seita.9G530800 1.0kb upstream 1.0kb upstream 4311 true scaffold_9: 55563713-55568023 Setaria italica
Seita.9G530800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55567024-55568023 Setaria italica
Seita.9G530800 1.0kb downstream 1.0kb downstream 4311 true scaffold_9: 55562713-55567023 Setaria italica
Seita.9G530800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55562713-55563712 Setaria italica
Seita.9G530800 2.0kb upstream 2.0kb upstream 5311 true scaffold_9: 55563713-55569023 Setaria italica
Seita.9G530800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55567024-55569023 Setaria italica
Seita.9G530800 2.0kb downstream 2.0kb downstream 5311 true scaffold_9: 55561713-55567023 Setaria italica
Seita.9G530800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55561713-55563712 Setaria italica
Seita.9G530800 5.0kb upstream 5.0kb upstream 8311 true scaffold_9: 55563713-55572023 Setaria italica
Seita.9G530800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55567024-55572023 Setaria italica
Seita.9G530800 5.0kb downstream 5.0kb downstream 8311 true scaffold_9: 55558713-55567023 Setaria italica
Seita.9G530800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55558713-55563712 Setaria italica
Seita.9G530800 10.0kb upstream 10.0kb upstream 13311 true scaffold_9: 55563713-55577023 Setaria italica
Seita.9G530800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55567024-55577023 Setaria italica
Seita.9G530800 10.0kb downstream 10.0kb downstream 13311 true scaffold_9: 55553713-55567023 Setaria italica
Seita.9G530800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55553713-55563712 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192622 5267 Panicoideae View MSA
124587525 5269 Grass View MSA
122045243 5273 Angiosperm View MSA
121344387 5274 Embryophyte View MSA
123424685 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.276        
cufflinks 9.519        
cufflinks 10.622        
cufflinks 10.067        
cufflinks 19.603     High High
cufflinks 9.204        
cufflinks 19.503     High High
cufflinks 11.458        
cufflinks 29.538     High High
cufflinks 4.803       Low
cufflinks 8.454        
cufflinks 4.98       Low
cufflinks 5.133       Low
cufflinks 14.566     High  
cufflinks 5.422       Low
cufflinks 24.413     High High
cufflinks 6.199        
cufflinks 12.121     High  
cufflinks 12.951     High  
cufflinks 6.454        

0 Strain