Gene : Seita.9G532500 S. italica v2.2
Defline:  (1 of 3) 2.4.1.25 - 4-alpha-glucanotransferase / Oligo-1,4-1,4-glucantransferase Genomic Order:  5325
Name:  ? Seita.9G532500 Secondary Identifier:  ? PAC:32687182
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6724 Setaria italica pathologic  
Sitalica PWY-7238 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G532500 0.5kb upstream 0.5kb upstream 8749 true scaffold_9: 55696048-55704796 Setaria italica
Seita.9G532500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 55704297-55704796 Setaria italica
Seita.9G532500 0.5kb downstream 0.5kb downstream 8749 true scaffold_9: 55695548-55704296 Setaria italica
Seita.9G532500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 55695548-55696047 Setaria italica
Seita.9G532500 1.0kb upstream 1.0kb upstream 9249 true scaffold_9: 55696048-55705296 Setaria italica
Seita.9G532500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 55704297-55705296 Setaria italica
Seita.9G532500 1.0kb downstream 1.0kb downstream 9249 true scaffold_9: 55695048-55704296 Setaria italica
Seita.9G532500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 55695048-55696047 Setaria italica
Seita.9G532500 2.0kb upstream 2.0kb upstream 10249 true scaffold_9: 55696048-55706296 Setaria italica
Seita.9G532500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 55704297-55706296 Setaria italica
Seita.9G532500 2.0kb downstream 2.0kb downstream 10249 true scaffold_9: 55694048-55704296 Setaria italica
Seita.9G532500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 55694048-55696047 Setaria italica
Seita.9G532500 5.0kb upstream 5.0kb upstream 13249 true scaffold_9: 55696048-55709296 Setaria italica
Seita.9G532500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 55704297-55709296 Setaria italica
Seita.9G532500 5.0kb downstream 5.0kb downstream 13249 true scaffold_9: 55691048-55704296 Setaria italica
Seita.9G532500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 55691048-55696047 Setaria italica
Seita.9G532500 10.0kb upstream 10.0kb upstream 18249 true scaffold_9: 55696048-55714296 Setaria italica
Seita.9G532500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 55704297-55714296 Setaria italica
Seita.9G532500 10.0kb downstream 10.0kb downstream 18249 true scaffold_9: 55686048-55704296 Setaria italica
Seita.9G532500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 55686048-55696047 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192218 5267 Panicoideae View MSA
124569180 5269 Grass View MSA
122045486 5273 Angiosperm View MSA
121345018 5274 Embryophyte View MSA
123425111 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.803        
cufflinks 7.451        
cufflinks 15.45     High  
cufflinks 12.932     High  
cufflinks 21.141     High High
cufflinks 6.597        
cufflinks 19.209     High High
cufflinks 22.61     High High
cufflinks 20.105     High High
cufflinks 3.258        
cufflinks 7.609        
cufflinks 1.297       Low
cufflinks 1.975       Low
cufflinks 25.386     High High
cufflinks 1.906       Low
cufflinks 13.604     High  
cufflinks 1.842       Low
cufflinks 2.073       Low
cufflinks 13.955     High  
cufflinks 2.18       Low

0 Strain