Gene : Seita.9G539800 S. italica v2.2
Defline:  (1 of 3) PTHR23105:SF31 - RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  5398
Name:  ? Seita.9G539800 Secondary Identifier:  ? PAC:32691129
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G539800 0.5kb upstream 0.5kb upstream 3061 true scaffold_9: 56153797-56156857 Setaria italica
Seita.9G539800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56153797-56154296 Setaria italica
Seita.9G539800 0.5kb downstream 0.5kb downstream 3061 true scaffold_9: 56154297-56157357 Setaria italica
Seita.9G539800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56156858-56157357 Setaria italica
Seita.9G539800 1.0kb upstream 1.0kb upstream 3561 true scaffold_9: 56153297-56156857 Setaria italica
Seita.9G539800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56153297-56154296 Setaria italica
Seita.9G539800 1.0kb downstream 1.0kb downstream 3561 true scaffold_9: 56154297-56157857 Setaria italica
Seita.9G539800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56156858-56157857 Setaria italica
Seita.9G539800 2.0kb upstream 2.0kb upstream 4561 true scaffold_9: 56152297-56156857 Setaria italica
Seita.9G539800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56152297-56154296 Setaria italica
Seita.9G539800 2.0kb downstream 2.0kb downstream 4561 true scaffold_9: 56154297-56158857 Setaria italica
Seita.9G539800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56156858-56158857 Setaria italica
Seita.9G539800 5.0kb upstream 5.0kb upstream 7561 true scaffold_9: 56149297-56156857 Setaria italica
Seita.9G539800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56149297-56154296 Setaria italica
Seita.9G539800 5.0kb downstream 5.0kb downstream 7561 true scaffold_9: 56154297-56161857 Setaria italica
Seita.9G539800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56156858-56161857 Setaria italica
Seita.9G539800 10.0kb upstream 10.0kb upstream 12561 true scaffold_9: 56144297-56156857 Setaria italica
Seita.9G539800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56144297-56154296 Setaria italica
Seita.9G539800 10.0kb downstream 10.0kb downstream 12561 true scaffold_9: 56154297-56166857 Setaria italica
Seita.9G539800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56156858-56166857 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063143 5267 Panicoideae View MSA
124590216 5269 Grass View MSA
122042558 5273 Angiosperm View MSA
121347008 5274 Embryophyte View MSA
123426351 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.805        
cufflinks 13.56     High  
cufflinks 8.348        
cufflinks 5.047       Low
cufflinks 7.476        
cufflinks 15.58     High High
cufflinks 12.047        
cufflinks 13.862     High  
cufflinks 11.122        
cufflinks 3.319       Low
cufflinks 10.728        
cufflinks 13.416        
cufflinks 4.155       Low
cufflinks 12.779        
cufflinks 12.504        
cufflinks 10.909        
cufflinks 15.956     High High
cufflinks 12.043     High  
cufflinks 7.327        
cufflinks 12.035        

0 Strain