Gene : Seita.9G547200 S. italica v2.2
Defline:  (1 of 1) PTHR36738:SF1 - EXPRESSED PROTEIN Genomic Order:  5472
Name:  ? Seita.9G547200 Secondary Identifier:  ? PAC:32692532
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G547200 0.5kb upstream 0.5kb upstream 2358 true scaffold_9: 56709297-56711654 Setaria italica
Seita.9G547200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56711155-56711654 Setaria italica
Seita.9G547200 0.5kb downstream 0.5kb downstream 2358 true scaffold_9: 56708797-56711154 Setaria italica
Seita.9G547200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56708797-56709296 Setaria italica
Seita.9G547200 1.0kb upstream 1.0kb upstream 2858 true scaffold_9: 56709297-56712154 Setaria italica
Seita.9G547200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56711155-56712154 Setaria italica
Seita.9G547200 1.0kb downstream 1.0kb downstream 2858 true scaffold_9: 56708297-56711154 Setaria italica
Seita.9G547200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56708297-56709296 Setaria italica
Seita.9G547200 2.0kb upstream 2.0kb upstream 3858 true scaffold_9: 56709297-56713154 Setaria italica
Seita.9G547200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56711155-56713154 Setaria italica
Seita.9G547200 2.0kb downstream 2.0kb downstream 3858 true scaffold_9: 56707297-56711154 Setaria italica
Seita.9G547200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56707297-56709296 Setaria italica
Seita.9G547200 5.0kb upstream 5.0kb upstream 6858 true scaffold_9: 56709297-56716154 Setaria italica
Seita.9G547200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56711155-56716154 Setaria italica
Seita.9G547200 5.0kb downstream 5.0kb downstream 6858 true scaffold_9: 56704297-56711154 Setaria italica
Seita.9G547200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56704297-56709296 Setaria italica
Seita.9G547200 10.0kb upstream 10.0kb upstream 11858 true scaffold_9: 56709297-56721154 Setaria italica
Seita.9G547200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56711155-56721154 Setaria italica
Seita.9G547200 10.0kb downstream 10.0kb downstream 11858 true scaffold_9: 56699297-56711154 Setaria italica
Seita.9G547200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56699297-56709296 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041422 5273 Angiosperm View MSA
122186192 5267 Panicoideae View MSA
124573058 5269 Grass View MSA
121347775 5274 Embryophyte View MSA
123423846 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.983        
cufflinks 2.959        
cufflinks 0.879       Low
cufflinks 2.462        
cufflinks 6.965       High
cufflinks 1.875        
cufflinks 3.177        
cufflinks 26.634     High High
cufflinks 14.96     High High
cufflinks 1.803        
cufflinks 1.139        
cufflinks 1.227        
cufflinks 1.648        
cufflinks 1.346        
cufflinks 1.021        
cufflinks 3.139        
cufflinks 2.175        
cufflinks 0.66       Low
cufflinks 2.191        
cufflinks 2.545        

0 Strain