Gene : Seita.9G547400 S. italica v2.2
Defline:  (1 of 1) PTHR13018//PTHR13018:SF52 - PROBABLE MEMBRANE PROTEIN DUF221-RELATED Genomic Order:  5474
Name:  ? Seita.9G547400 Secondary Identifier:  ? PAC:32689906
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G547400 0.5kb upstream 0.5kb upstream 3665 true scaffold_9: 56718236-56721900 Setaria italica
Seita.9G547400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 56721401-56721900 Setaria italica
Seita.9G547400 0.5kb downstream 0.5kb downstream 3665 true scaffold_9: 56717736-56721400 Setaria italica
Seita.9G547400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 56717736-56718235 Setaria italica
Seita.9G547400 1.0kb upstream 1.0kb upstream 4165 true scaffold_9: 56718236-56722400 Setaria italica
Seita.9G547400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 56721401-56722400 Setaria italica
Seita.9G547400 1.0kb downstream 1.0kb downstream 4165 true scaffold_9: 56717236-56721400 Setaria italica
Seita.9G547400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 56717236-56718235 Setaria italica
Seita.9G547400 2.0kb upstream 2.0kb upstream 5165 true scaffold_9: 56718236-56723400 Setaria italica
Seita.9G547400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 56721401-56723400 Setaria italica
Seita.9G547400 2.0kb downstream 2.0kb downstream 5165 true scaffold_9: 56716236-56721400 Setaria italica
Seita.9G547400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 56716236-56718235 Setaria italica
Seita.9G547400 5.0kb upstream 5.0kb upstream 8165 true scaffold_9: 56718236-56726400 Setaria italica
Seita.9G547400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 56721401-56726400 Setaria italica
Seita.9G547400 5.0kb downstream 5.0kb downstream 8165 true scaffold_9: 56713236-56721400 Setaria italica
Seita.9G547400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 56713236-56718235 Setaria italica
Seita.9G547400 10.0kb upstream 10.0kb upstream 13165 true scaffold_9: 56718236-56731400 Setaria italica
Seita.9G547400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 56721401-56731400 Setaria italica
Seita.9G547400 10.0kb downstream 10.0kb downstream 13165 true scaffold_9: 56708236-56721400 Setaria italica
Seita.9G547400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 56708236-56718235 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182549 5267 Panicoideae View MSA
124568387 5269 Grass View MSA
122043002 5273 Angiosperm View MSA
121310062 5274 Embryophyte View MSA
123347658 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.174        
cufflinks 9.167       Low
cufflinks 14.37     High  
cufflinks 13.658     High  
cufflinks 13.509     High  
cufflinks 9.274       Low
cufflinks 10.353        
cufflinks 7.147       Low
cufflinks 9.389       Low
cufflinks 11.358        
cufflinks 12.932        
cufflinks 19.353     High High
cufflinks 12.665        
cufflinks 9.455        
cufflinks 13.475        
cufflinks 15.517     High  
cufflinks 12.222        
cufflinks 26.652     High High
cufflinks 14.25     High  
cufflinks 13.466        

0 Strain