Gene : Seita.9G485200 S. italica v2.2
Defline:  (1 of 2) 3.5.1.108 - UDP-3-O-acyl-N-acetylglucosamine deacetylase / UDP-3-O-acyl-GlcNAc deacetylase Genomic Order:  4852
Name:  ? Seita.9G485200 Secondary Identifier:  ? PAC:32687393
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NAGLIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G485200 0.5kb upstream 0.5kb upstream 5333 true scaffold_9: 52526822-52532154 Setaria italica
Seita.9G485200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 52531655-52532154 Setaria italica
Seita.9G485200 0.5kb downstream 0.5kb downstream 5333 true scaffold_9: 52526322-52531654 Setaria italica
Seita.9G485200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 52526322-52526821 Setaria italica
Seita.9G485200 1.0kb upstream 1.0kb upstream 5833 true scaffold_9: 52526822-52532654 Setaria italica
Seita.9G485200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 52531655-52532654 Setaria italica
Seita.9G485200 1.0kb downstream 1.0kb downstream 5833 true scaffold_9: 52525822-52531654 Setaria italica
Seita.9G485200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 52525822-52526821 Setaria italica
Seita.9G485200 2.0kb upstream 2.0kb upstream 6833 true scaffold_9: 52526822-52533654 Setaria italica
Seita.9G485200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 52531655-52533654 Setaria italica
Seita.9G485200 2.0kb downstream 2.0kb downstream 6833 true scaffold_9: 52524822-52531654 Setaria italica
Seita.9G485200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 52524822-52526821 Setaria italica
Seita.9G485200 5.0kb upstream 5.0kb upstream 9833 true scaffold_9: 52526822-52536654 Setaria italica
Seita.9G485200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 52531655-52536654 Setaria italica
Seita.9G485200 5.0kb downstream 5.0kb downstream 9833 true scaffold_9: 52521822-52531654 Setaria italica
Seita.9G485200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 52521822-52526821 Setaria italica
Seita.9G485200 10.0kb upstream 10.0kb upstream 14833 true scaffold_9: 52526822-52541654 Setaria italica
Seita.9G485200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 52531655-52541654 Setaria italica
Seita.9G485200 10.0kb downstream 10.0kb downstream 14833 true scaffold_9: 52516822-52531654 Setaria italica
Seita.9G485200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 52516822-52526821 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176313 5267 Panicoideae View MSA
124573570 5269 Grass View MSA
122046520 5273 Angiosperm View MSA
121346728 5274 Embryophyte View MSA
123424011 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.525        
cufflinks 1.316        
cufflinks 0.461       Low
cufflinks 0.471       Low
cufflinks 0.534       Low
cufflinks 1.144        
cufflinks 1.377        
cufflinks 1.239        
cufflinks 0.567       Low
cufflinks 1.111        
cufflinks 1.618        
cufflinks 2.616       High
cufflinks 2.012        
cufflinks 0.493       Low
cufflinks 1.928        
cufflinks 1.918        
cufflinks 2.705       High
cufflinks 3.235       High
cufflinks 0.526       Low
cufflinks 2.499       High

0 Strain