Gene : Seita.9G494400 S. italica v2.2
Defline:  (1 of 62) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  4944
Name:  ? Seita.9G494400 Secondary Identifier:  ? PAC:32691280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G494400 0.5kb upstream 0.5kb upstream 3572 true scaffold_9: 53179878-53183449 Setaria italica
Seita.9G494400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53182950-53183449 Setaria italica
Seita.9G494400 0.5kb downstream 0.5kb downstream 3572 true scaffold_9: 53179378-53182949 Setaria italica
Seita.9G494400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53179378-53179877 Setaria italica
Seita.9G494400 1.0kb upstream 1.0kb upstream 4072 true scaffold_9: 53179878-53183949 Setaria italica
Seita.9G494400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53182950-53183949 Setaria italica
Seita.9G494400 1.0kb downstream 1.0kb downstream 4072 true scaffold_9: 53178878-53182949 Setaria italica
Seita.9G494400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53178878-53179877 Setaria italica
Seita.9G494400 2.0kb upstream 2.0kb upstream 5072 true scaffold_9: 53179878-53184949 Setaria italica
Seita.9G494400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53182950-53184949 Setaria italica
Seita.9G494400 2.0kb downstream 2.0kb downstream 5072 true scaffold_9: 53177878-53182949 Setaria italica
Seita.9G494400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53177878-53179877 Setaria italica
Seita.9G494400 5.0kb upstream 5.0kb upstream 8072 true scaffold_9: 53179878-53187949 Setaria italica
Seita.9G494400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53182950-53187949 Setaria italica
Seita.9G494400 5.0kb downstream 5.0kb downstream 8072 true scaffold_9: 53174878-53182949 Setaria italica
Seita.9G494400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53174878-53179877 Setaria italica
Seita.9G494400 10.0kb upstream 10.0kb upstream 13072 true scaffold_9: 53179878-53192949 Setaria italica
Seita.9G494400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53182950-53192949 Setaria italica
Seita.9G494400 10.0kb downstream 10.0kb downstream 13072 true scaffold_9: 53169878-53182949 Setaria italica
Seita.9G494400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53169878-53179877 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190175 5267 Panicoideae View MSA
124571621 5269 Grass View MSA
122047238 5273 Angiosperm View MSA
121310712 5274 Embryophyte View MSA
123348130 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.169        
cufflinks 3.929        
cufflinks 3.562        
cufflinks 2.102        
cufflinks 6.686        
cufflinks 4.067        
cufflinks 5.919        
cufflinks 6.519        
cufflinks 12.308       High
cufflinks 2.11        
cufflinks 4.022        
cufflinks 1.009       Low
cufflinks 1.59        
cufflinks 5.887        
cufflinks 1.397       Low
cufflinks 6.655        
cufflinks 1.064       Low
cufflinks 5.321        
cufflinks 1.581        
cufflinks 1.222       Low

0 Strain