Gene : Seita.9G496500 S. italica v2.2
Defline:  (1 of 5) PF13943 - WPP domain (WPP) Genomic Order:  4965
Name:  ? Seita.9G496500 Secondary Identifier:  ? PAC:32688826
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G496500 0.5kb upstream 0.5kb upstream 920 true scaffold_9: 53306432-53307351 Setaria italica
Seita.9G496500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53306852-53307351 Setaria italica
Seita.9G496500 0.5kb downstream 0.5kb downstream 920 true scaffold_9: 53305932-53306851 Setaria italica
Seita.9G496500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53305932-53306431 Setaria italica
Seita.9G496500 1.0kb upstream 1.0kb upstream 1420 true scaffold_9: 53306432-53307851 Setaria italica
Seita.9G496500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53306852-53307851 Setaria italica
Seita.9G496500 1.0kb downstream 1.0kb downstream 1420 true scaffold_9: 53305432-53306851 Setaria italica
Seita.9G496500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53305432-53306431 Setaria italica
Seita.9G496500 2.0kb upstream 2.0kb upstream 2420 true scaffold_9: 53306432-53308851 Setaria italica
Seita.9G496500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53306852-53308851 Setaria italica
Seita.9G496500 2.0kb downstream 2.0kb downstream 2420 true scaffold_9: 53304432-53306851 Setaria italica
Seita.9G496500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53304432-53306431 Setaria italica
Seita.9G496500 5.0kb upstream 5.0kb upstream 5420 true scaffold_9: 53306432-53311851 Setaria italica
Seita.9G496500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53306852-53311851 Setaria italica
Seita.9G496500 5.0kb downstream 5.0kb downstream 5420 true scaffold_9: 53301432-53306851 Setaria italica
Seita.9G496500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53301432-53306431 Setaria italica
Seita.9G496500 10.0kb upstream 10.0kb upstream 10420 true scaffold_9: 53306432-53316851 Setaria italica
Seita.9G496500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53306852-53316851 Setaria italica
Seita.9G496500 10.0kb downstream 10.0kb downstream 10420 true scaffold_9: 53296432-53306851 Setaria italica
Seita.9G496500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53296432-53306431 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196756 5267 Panicoideae View MSA
124586962 5269 Grass View MSA
122045089 5273 Angiosperm View MSA
121310396 5274 Embryophyte View MSA
123347890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.04        
cufflinks 4.142        
cufflinks 0.208       Low
cufflinks 0.56       Low
cufflinks 0.958        
cufflinks 5.357        
cufflinks 2.889        
cufflinks 3.908        
cufflinks 3.604        
cufflinks 16.332     High High
cufflinks 2.225        
cufflinks 1.397        
cufflinks 4.451        
cufflinks 0.722        
cufflinks 1.695        
cufflinks 1.25        
cufflinks 2.399        
cufflinks 0.864        
cufflinks 0.135       Low
cufflinks 4.388        

0 Strain