Gene : Seita.9G500600 S. italica v2.2
Defline:  (1 of 1) PTHR30544//PTHR30544:SF2 - 23S RRNA METHYLTRANSFERASE Genomic Order:  5006
Name:  ? Seita.9G500600 Secondary Identifier:  ? PAC:32691112
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G500600 0.5kb upstream 0.5kb upstream 6066 true scaffold_9: 53564274-53570339 Setaria italica
Seita.9G500600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 53564274-53564773 Setaria italica
Seita.9G500600 0.5kb downstream 0.5kb downstream 6066 true scaffold_9: 53564774-53570839 Setaria italica
Seita.9G500600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 53570340-53570839 Setaria italica
Seita.9G500600 1.0kb upstream 1.0kb upstream 6566 true scaffold_9: 53563774-53570339 Setaria italica
Seita.9G500600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 53563774-53564773 Setaria italica
Seita.9G500600 1.0kb downstream 1.0kb downstream 6566 true scaffold_9: 53564774-53571339 Setaria italica
Seita.9G500600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 53570340-53571339 Setaria italica
Seita.9G500600 2.0kb upstream 2.0kb upstream 7566 true scaffold_9: 53562774-53570339 Setaria italica
Seita.9G500600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 53562774-53564773 Setaria italica
Seita.9G500600 2.0kb downstream 2.0kb downstream 7566 true scaffold_9: 53564774-53572339 Setaria italica
Seita.9G500600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 53570340-53572339 Setaria italica
Seita.9G500600 5.0kb upstream 5.0kb upstream 10566 true scaffold_9: 53559774-53570339 Setaria italica
Seita.9G500600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 53559774-53564773 Setaria italica
Seita.9G500600 5.0kb downstream 5.0kb downstream 10566 true scaffold_9: 53564774-53575339 Setaria italica
Seita.9G500600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 53570340-53575339 Setaria italica
Seita.9G500600 10.0kb upstream 10.0kb upstream 15566 true scaffold_9: 53554774-53570339 Setaria italica
Seita.9G500600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 53554774-53564773 Setaria italica
Seita.9G500600 10.0kb downstream 10.0kb downstream 15566 true scaffold_9: 53564774-53580339 Setaria italica
Seita.9G500600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 53570340-53580339 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189572 5267 Panicoideae View MSA
124572697 5269 Grass View MSA
122042435 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346752 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.622        
cufflinks 4.137       High
cufflinks 1.99        
cufflinks 1.689       Low
cufflinks 1.806       Low
cufflinks 3.461       High
cufflinks 1.761       Low
cufflinks 2.16        
cufflinks 2.067        
cufflinks 2.946        
cufflinks 2.709        
cufflinks 2.883        
cufflinks 1.754       Low
cufflinks 2.686        
cufflinks 2.608        
cufflinks 2.728        
cufflinks 2.559        
cufflinks 2.489        
cufflinks 1.693       Low
cufflinks 2.54        

0 Strain