Gene : Seita.9G511500 S. italica v2.2
Defline:  (1 of 24) PF00046//PF02183 - Homeobox domain (Homeobox) // Homeobox associated leucine zipper (HALZ) Genomic Order:  5115
Name:  ? Seita.9G511500 Secondary Identifier:  ? PAC:32687675
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G511500 0.5kb upstream 0.5kb upstream 2807 true scaffold_9: 54329497-54332303 Setaria italica
Seita.9G511500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 54331804-54332303 Setaria italica
Seita.9G511500 0.5kb downstream 0.5kb downstream 2807 true scaffold_9: 54328997-54331803 Setaria italica
Seita.9G511500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 54328997-54329496 Setaria italica
Seita.9G511500 1.0kb upstream 1.0kb upstream 3307 true scaffold_9: 54329497-54332803 Setaria italica
Seita.9G511500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 54331804-54332803 Setaria italica
Seita.9G511500 1.0kb downstream 1.0kb downstream 3307 true scaffold_9: 54328497-54331803 Setaria italica
Seita.9G511500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 54328497-54329496 Setaria italica
Seita.9G511500 2.0kb upstream 2.0kb upstream 4307 true scaffold_9: 54329497-54333803 Setaria italica
Seita.9G511500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 54331804-54333803 Setaria italica
Seita.9G511500 2.0kb downstream 2.0kb downstream 4307 true scaffold_9: 54327497-54331803 Setaria italica
Seita.9G511500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 54327497-54329496 Setaria italica
Seita.9G511500 5.0kb upstream 5.0kb upstream 7307 true scaffold_9: 54329497-54336803 Setaria italica
Seita.9G511500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 54331804-54336803 Setaria italica
Seita.9G511500 5.0kb downstream 5.0kb downstream 7307 true scaffold_9: 54324497-54331803 Setaria italica
Seita.9G511500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 54324497-54329496 Setaria italica
Seita.9G511500 10.0kb upstream 10.0kb upstream 12307 true scaffold_9: 54329497-54341803 Setaria italica
Seita.9G511500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 54331804-54341803 Setaria italica
Seita.9G511500 10.0kb downstream 10.0kb downstream 12307 true scaffold_9: 54319497-54331803 Setaria italica
Seita.9G511500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 54319497-54329496 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197892 5267 Panicoideae View MSA
124580155 5269 Grass View MSA
122049195 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.605     High High
cufflinks 22.161     High High
cufflinks 0.141       Low
cufflinks 0.283       Low
cufflinks 0.717       Low
cufflinks 28.289     High High
cufflinks 2.271        
cufflinks 2.975        
cufflinks 2.094        
cufflinks 8.301        
cufflinks 6.627        
cufflinks 2.976        
cufflinks 12.665       High
cufflinks 1.577        
cufflinks 6.624        
cufflinks 2.033        
cufflinks 3.462        
cufflinks 2.335        
cufflinks 0.654       Low
cufflinks 6.672        

0 Strain