Gene : Seita.9G563800 S. italica v2.2
Defline:  (1 of 1) PF01497 - Periplasmic binding protein Genomic Order:  5638
Name:  ? Seita.9G563800 Secondary Identifier:  ? PAC:32687791
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G563800 0.5kb upstream 0.5kb upstream 3948 true scaffold_9: 57761337-57765284 Setaria italica
Seita.9G563800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 57764785-57765284 Setaria italica
Seita.9G563800 0.5kb downstream 0.5kb downstream 3948 true scaffold_9: 57760837-57764784 Setaria italica
Seita.9G563800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 57760837-57761336 Setaria italica
Seita.9G563800 1.0kb upstream 1.0kb upstream 4448 true scaffold_9: 57761337-57765784 Setaria italica
Seita.9G563800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 57764785-57765784 Setaria italica
Seita.9G563800 1.0kb downstream 1.0kb downstream 4448 true scaffold_9: 57760337-57764784 Setaria italica
Seita.9G563800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 57760337-57761336 Setaria italica
Seita.9G563800 2.0kb upstream 2.0kb upstream 5448 true scaffold_9: 57761337-57766784 Setaria italica
Seita.9G563800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 57764785-57766784 Setaria italica
Seita.9G563800 2.0kb downstream 2.0kb downstream 5448 true scaffold_9: 57759337-57764784 Setaria italica
Seita.9G563800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 57759337-57761336 Setaria italica
Seita.9G563800 5.0kb upstream 5.0kb upstream 8448 true scaffold_9: 57761337-57769784 Setaria italica
Seita.9G563800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 57764785-57769784 Setaria italica
Seita.9G563800 5.0kb downstream 5.0kb downstream 8448 true scaffold_9: 57756337-57764784 Setaria italica
Seita.9G563800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 57756337-57761336 Setaria italica
Seita.9G563800 10.0kb upstream 10.0kb upstream 13448 true scaffold_9: 57761337-57774784 Setaria italica
Seita.9G563800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 57764785-57774784 Setaria italica
Seita.9G563800 10.0kb downstream 10.0kb downstream 13448 true scaffold_9: 57751337-57764784 Setaria italica
Seita.9G563800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 57751337-57761336 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187236 5267 Panicoideae View MSA
124573555 5269 Grass View MSA
122045539 5273 Angiosperm View MSA
121310463 5274 Embryophyte View MSA
123425255 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.431       High
cufflinks 2.288        
cufflinks 0.66        
cufflinks 0.991        
cufflinks 0.749        
cufflinks 2.632        
cufflinks 4.11       High
cufflinks 4.071       High
cufflinks 3.929       High
cufflinks 2.67        
cufflinks 4.026       High
cufflinks 0.145       Low
cufflinks 0.102     Low Low
cufflinks 0.326        
cufflinks 0.171       Low
cufflinks 1.688        
cufflinks 0.306        
cufflinks 1.11        
cufflinks 0.404        
cufflinks 0.127     Low Low

0 Strain