Gene : Seita.9G569200 S. italica v2.2
Defline:  (1 of 2) PTHR15371//PTHR15371:SF6 - TIM23 Genomic Order:  5692
Name:  ? Seita.9G569200 Secondary Identifier:  ? PAC:32689270
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G569200 0.5kb upstream 0.5kb upstream 1703 true scaffold_9: 58132436-58134138 Setaria italica
Seita.9G569200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58132436-58132935 Setaria italica
Seita.9G569200 0.5kb downstream 0.5kb downstream 1703 true scaffold_9: 58132936-58134638 Setaria italica
Seita.9G569200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58134139-58134638 Setaria italica
Seita.9G569200 1.0kb upstream 1.0kb upstream 2203 true scaffold_9: 58131936-58134138 Setaria italica
Seita.9G569200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58131936-58132935 Setaria italica
Seita.9G569200 1.0kb downstream 1.0kb downstream 2203 true scaffold_9: 58132936-58135138 Setaria italica
Seita.9G569200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58134139-58135138 Setaria italica
Seita.9G569200 2.0kb upstream 2.0kb upstream 3203 true scaffold_9: 58130936-58134138 Setaria italica
Seita.9G569200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58130936-58132935 Setaria italica
Seita.9G569200 2.0kb downstream 2.0kb downstream 3203 true scaffold_9: 58132936-58136138 Setaria italica
Seita.9G569200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58134139-58136138 Setaria italica
Seita.9G569200 5.0kb upstream 5.0kb upstream 6203 true scaffold_9: 58127936-58134138 Setaria italica
Seita.9G569200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58127936-58132935 Setaria italica
Seita.9G569200 5.0kb downstream 5.0kb downstream 6203 true scaffold_9: 58132936-58139138 Setaria italica
Seita.9G569200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58134139-58139138 Setaria italica
Seita.9G569200 10.0kb upstream 10.0kb upstream 11203 true scaffold_9: 58122936-58134138 Setaria italica
Seita.9G569200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58122936-58132935 Setaria italica
Seita.9G569200 10.0kb downstream 10.0kb downstream 11203 true scaffold_9: 58132936-58144138 Setaria italica
Seita.9G569200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58134139-58144138 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187559 5267 Panicoideae View MSA
124586369 5269 Grass View MSA
122045727 5273 Angiosperm View MSA
121349022 5274 Embryophyte View MSA
123425450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.45       Low
cufflinks 5.877        
cufflinks 4.951        
cufflinks 6.16        
cufflinks 5.528        
cufflinks 6.171        
cufflinks 2.973       Low
cufflinks 10.593       High
cufflinks 4.275        
cufflinks 21.641     High High
cufflinks 4.234        
cufflinks 6.875        
cufflinks 4.278        
cufflinks 13.495       High
cufflinks 6.964        
cufflinks 2.632       Low
cufflinks 7.351        
cufflinks 3.768        
cufflinks 8.617        
cufflinks 7.399        

0 Strain