Gene : Seita.9G577600 S. italica v2.2
Defline:  (1 of 2) PTHR13162 - CCR4-NOT TRANSCRIPTION COMPLEX Genomic Order:  5776
Name:  ? Seita.9G577600 Secondary Identifier:  ? PAC:32691155
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G577600 0.5kb upstream 0.5kb upstream 20730 true scaffold_9: 58652128-58672857 Setaria italica
Seita.9G577600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58672358-58672857 Setaria italica
Seita.9G577600 0.5kb downstream 0.5kb downstream 20730 true scaffold_9: 58651628-58672357 Setaria italica
Seita.9G577600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58651628-58652127 Setaria italica
Seita.9G577600 1.0kb upstream 1.0kb upstream 21230 true scaffold_9: 58652128-58673357 Setaria italica
Seita.9G577600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58672358-58673357 Setaria italica
Seita.9G577600 1.0kb downstream 1.0kb downstream 21230 true scaffold_9: 58651128-58672357 Setaria italica
Seita.9G577600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58651128-58652127 Setaria italica
Seita.9G577600 2.0kb upstream 2.0kb upstream 22230 true scaffold_9: 58652128-58674357 Setaria italica
Seita.9G577600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58672358-58674357 Setaria italica
Seita.9G577600 2.0kb downstream 2.0kb downstream 22230 true scaffold_9: 58650128-58672357 Setaria italica
Seita.9G577600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58650128-58652127 Setaria italica
Seita.9G577600 5.0kb upstream 5.0kb upstream 25230 true scaffold_9: 58652128-58677357 Setaria italica
Seita.9G577600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58672358-58677357 Setaria italica
Seita.9G577600 5.0kb downstream 5.0kb downstream 25230 true scaffold_9: 58647128-58672357 Setaria italica
Seita.9G577600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58647128-58652127 Setaria italica
Seita.9G577600 10.0kb upstream 10.0kb upstream 30230 true scaffold_9: 58652128-58682357 Setaria italica
Seita.9G577600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58672358-58682357 Setaria italica
Seita.9G577600 10.0kb downstream 10.0kb downstream 30230 true scaffold_9: 58642128-58672357 Setaria italica
Seita.9G577600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58642128-58652127 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197302 5267 Panicoideae View MSA
124585691 5269 Grass View MSA
122047484 5273 Angiosperm View MSA
121349285 5274 Embryophyte View MSA
123428109 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.633       High
cufflinks 6.402        
cufflinks 3.252        
cufflinks 2.49        
cufflinks 2.516        
cufflinks 5.622        
cufflinks 6.031        
cufflinks 2.62        
cufflinks 3.882        
cufflinks 2.293        
cufflinks 9.782       High
cufflinks 2.108        
cufflinks 2.503        
cufflinks 1.95       Low
cufflinks 3.065        
cufflinks 9.116       High
cufflinks 2.094        
cufflinks 8.668       High
cufflinks 1.561       Low
cufflinks 2.415        

0 Strain