Gene : Seita.9G579900 S. italica v2.2
Defline:  (1 of 1) PTHR10150 - DNA REPAIR ENDONUCLEASE XPF Genomic Order:  5799
Name:  ? Seita.9G579900 Secondary Identifier:  ? PAC:32687163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G579900 0.5kb upstream 0.5kb upstream 5013 true scaffold_9: 58814445-58819457 Setaria italica
Seita.9G579900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58818958-58819457 Setaria italica
Seita.9G579900 0.5kb downstream 0.5kb downstream 5013 true scaffold_9: 58813945-58818957 Setaria italica
Seita.9G579900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58813945-58814444 Setaria italica
Seita.9G579900 1.0kb upstream 1.0kb upstream 5513 true scaffold_9: 58814445-58819957 Setaria italica
Seita.9G579900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58818958-58819957 Setaria italica
Seita.9G579900 1.0kb downstream 1.0kb downstream 5513 true scaffold_9: 58813445-58818957 Setaria italica
Seita.9G579900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58813445-58814444 Setaria italica
Seita.9G579900 2.0kb upstream 2.0kb upstream 6513 true scaffold_9: 58814445-58820957 Setaria italica
Seita.9G579900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58818958-58820957 Setaria italica
Seita.9G579900 2.0kb downstream 2.0kb downstream 6513 true scaffold_9: 58812445-58818957 Setaria italica
Seita.9G579900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58812445-58814444 Setaria italica
Seita.9G579900 5.0kb upstream 5.0kb upstream 9513 true scaffold_9: 58814445-58823957 Setaria italica
Seita.9G579900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58818958-58823957 Setaria italica
Seita.9G579900 5.0kb downstream 5.0kb downstream 9513 true scaffold_9: 58809445-58818957 Setaria italica
Seita.9G579900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58809445-58814444 Setaria italica
Seita.9G579900 10.0kb upstream 10.0kb upstream 14513 true scaffold_9: 58814445-58828957 Setaria italica
Seita.9G579900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58818958-58828957 Setaria italica
Seita.9G579900 10.0kb downstream 10.0kb downstream 14513 true scaffold_9: 58804445-58818957 Setaria italica
Seita.9G579900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58804445-58814444 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026556 5273 Angiosperm View MSA
122199425 5267 Panicoideae View MSA
124575342 5269 Grass View MSA
121346199 5274 Embryophyte View MSA
123424869 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.704     High  
cufflinks 12.429       Low
cufflinks 17.211     High  
cufflinks 19.029     High  
cufflinks 16.752     High  
cufflinks 11.603       Low
cufflinks 15.867     High  
cufflinks 12.8        
cufflinks 13.133     High  
cufflinks 14.668        
cufflinks 15.412     High  
cufflinks 22.455     High High
cufflinks 16.754     High  
cufflinks 13.104        
cufflinks 17.714     High  
cufflinks 24.169     High High
cufflinks 18.501     High  
cufflinks 35.203     High High
cufflinks 12.206     High Low
cufflinks 16.141     High  

0 Strain