Gene : AT3G61580 A. thaliana TAIR10
Defline:  (1 of 2) 1.14.19.4 - Delta(8)-fatty-acid desaturase / SLD Genomic Order:  5226
Name:  ? AT3G61580 Secondary Identifier:  ? PAC:19660165
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7601 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G61580 0.5kb upstream 0.5kb upstream 2426 true Chr3: 22785547-22787972 Arabidopsis thaliana
AT3G61580 0.5kb upstream 0.5kb upstream 500 false Chr3: 22785547-22786046 Arabidopsis thaliana
AT3G61580 0.5kb downstream 0.5kb downstream 2426 true Chr3: 22786047-22788472 Arabidopsis thaliana
AT3G61580 0.5kb downstream 0.5kb downstream 500 false Chr3: 22787973-22788472 Arabidopsis thaliana
AT3G61580 1.0kb upstream 1.0kb upstream 2926 true Chr3: 22785047-22787972 Arabidopsis thaliana
AT3G61580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 22785047-22786046 Arabidopsis thaliana
AT3G61580 1.0kb downstream 1.0kb downstream 2926 true Chr3: 22786047-22788972 Arabidopsis thaliana
AT3G61580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22787973-22788972 Arabidopsis thaliana
AT3G61580 2.0kb upstream 2.0kb upstream 3926 true Chr3: 22784047-22787972 Arabidopsis thaliana
AT3G61580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 22784047-22786046 Arabidopsis thaliana
AT3G61580 2.0kb downstream 2.0kb downstream 3926 true Chr3: 22786047-22789972 Arabidopsis thaliana
AT3G61580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22787973-22789972 Arabidopsis thaliana
AT3G61580 5.0kb upstream 5.0kb upstream 6926 true Chr3: 22781047-22787972 Arabidopsis thaliana
AT3G61580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 22781047-22786046 Arabidopsis thaliana
AT3G61580 5.0kb downstream 5.0kb downstream 6926 true Chr3: 22786047-22792972 Arabidopsis thaliana
AT3G61580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22787973-22792972 Arabidopsis thaliana
AT3G61580 10.0kb upstream 10.0kb upstream 11926 true Chr3: 22776047-22787972 Arabidopsis thaliana
AT3G61580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 22776047-22786046 Arabidopsis thaliana
AT3G61580 10.0kb downstream 10.0kb downstream 11926 true Chr3: 22786047-22797972 Arabidopsis thaliana
AT3G61580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22787973-22797972 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047499 5273 Angiosperm View MSA
122366285 5261 Brassicaceae View MSA
123840551 5264 Brassicales-Malvales View MSA
124345527 5266 SBM View MSA
124238408 5268 Malvidae View MSA
124071375 5270 Rosid View MSA
123743417 5271 Pentapetalae View MSA
122792306 5272 Eudicot View MSA
121347259 5274 Embryophyte View MSA
123427370 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.153     High Low
cufflinks 152.551     High  
cufflinks 121.584     High  
cufflinks 107.698     High  
cufflinks 206.077     High High
cufflinks 130.283     High  

0 Strain