Gene : CCD1 A. thaliana TAIR10
Primary Identifier:  ? AT3G63520 Defline:  (1 of 1) K11159 - carotenoid cleavage dioxygenase (K11159)
Genomic Order:  5435 Name:  ? AT3G63520
Secondary Identifier:  ? PAC:19660377
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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G63520 0.5kb upstream 0.5kb upstream 3668 true Chr3: 23452411-23456078 Arabidopsis thaliana
AT3G63520 0.5kb upstream 0.5kb upstream 500 false Chr3: 23452411-23452910 Arabidopsis thaliana
AT3G63520 0.5kb downstream 0.5kb downstream 3668 true Chr3: 23452911-23456578 Arabidopsis thaliana
AT3G63520 0.5kb downstream 0.5kb downstream 500 false Chr3: 23456079-23456578 Arabidopsis thaliana
AT3G63520 1.0kb upstream 1.0kb upstream 4168 true Chr3: 23451911-23456078 Arabidopsis thaliana
AT3G63520 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23451911-23452910 Arabidopsis thaliana
AT3G63520 1.0kb downstream 1.0kb downstream 4168 true Chr3: 23452911-23457078 Arabidopsis thaliana
AT3G63520 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23456079-23457078 Arabidopsis thaliana
AT3G63520 2.0kb upstream 2.0kb upstream 5168 true Chr3: 23450911-23456078 Arabidopsis thaliana
AT3G63520 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23450911-23452910 Arabidopsis thaliana
AT3G63520 2.0kb downstream 2.0kb downstream 5168 true Chr3: 23452911-23458078 Arabidopsis thaliana
AT3G63520 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23456079-23458078 Arabidopsis thaliana
AT3G63520 5.0kb upstream 5.0kb upstream 8168 true Chr3: 23447911-23456078 Arabidopsis thaliana
AT3G63520 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23447911-23452910 Arabidopsis thaliana
AT3G63520 5.0kb downstream 5.0kb downstream 6920 true Chr3: 23452911-23459830 Arabidopsis thaliana
AT3G63520 5.0kb downstream 5.0kb downstream 3752 false Chr3: 23456079-23459830 Arabidopsis thaliana
AT3G63520 10.0kb upstream 10.0kb upstream 13168 true Chr3: 23442911-23456078 Arabidopsis thaliana
AT3G63520 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23442911-23452910 Arabidopsis thaliana
AT3G63520 10.0kb downstream 10.0kb downstream 6920 true Chr3: 23452911-23459830 Arabidopsis thaliana
AT3G63520 10.0kb downstream 10.0kb downstream 3752 false Chr3: 23456079-23459830 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367402 5261 Brassicaceae View MSA
123828703 5264 Brassicales-Malvales View MSA
124341776 5266 SBM View MSA
124236876 5268 Malvidae View MSA
124065010 5270 Rosid View MSA
123749061 5271 Pentapetalae View MSA
122787138 5272 Eudicot View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 104.294     High  
cufflinks 31.274     High  
cufflinks 128.501     High  
cufflinks 31.152     High  
cufflinks 131.978     High High
cufflinks 21.892       Low

0 Strain