Gene : MBD4 A. thaliana TAIR10
Primary Identifier:  ? AT3G63030 Defline:  (1 of 8) PTHR12396 - METHYL-CPG BINDING PROTEIN, MBD
Genomic Order:  5384 Name:  ? AT3G63030
Secondary Identifier:  ? PAC:19661643
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G63030 0.5kb upstream 0.5kb upstream 1755 true Chr3: 23294843-23296597 Arabidopsis thaliana
AT3G63030 0.5kb upstream 0.5kb upstream 500 false Chr3: 23294843-23295342 Arabidopsis thaliana
AT3G63030 0.5kb downstream 0.5kb downstream 1755 true Chr3: 23295343-23297097 Arabidopsis thaliana
AT3G63030 0.5kb downstream 0.5kb downstream 500 false Chr3: 23296598-23297097 Arabidopsis thaliana
AT3G63030 1.0kb upstream 1.0kb upstream 2255 true Chr3: 23294343-23296597 Arabidopsis thaliana
AT3G63030 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23294343-23295342 Arabidopsis thaliana
AT3G63030 1.0kb downstream 1.0kb downstream 2255 true Chr3: 23295343-23297597 Arabidopsis thaliana
AT3G63030 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23296598-23297597 Arabidopsis thaliana
AT3G63030 2.0kb upstream 2.0kb upstream 3255 true Chr3: 23293343-23296597 Arabidopsis thaliana
AT3G63030 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23293343-23295342 Arabidopsis thaliana
AT3G63030 2.0kb downstream 2.0kb downstream 3255 true Chr3: 23295343-23298597 Arabidopsis thaliana
AT3G63030 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23296598-23298597 Arabidopsis thaliana
AT3G63030 5.0kb upstream 5.0kb upstream 6255 true Chr3: 23290343-23296597 Arabidopsis thaliana
AT3G63030 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23290343-23295342 Arabidopsis thaliana
AT3G63030 5.0kb downstream 5.0kb downstream 6255 true Chr3: 23295343-23301597 Arabidopsis thaliana
AT3G63030 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23296598-23301597 Arabidopsis thaliana
AT3G63030 10.0kb upstream 10.0kb upstream 11255 true Chr3: 23285343-23296597 Arabidopsis thaliana
AT3G63030 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23285343-23295342 Arabidopsis thaliana
AT3G63030 10.0kb downstream 10.0kb downstream 11255 true Chr3: 23295343-23306597 Arabidopsis thaliana
AT3G63030 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23296598-23306597 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369386 5261 Brassicaceae View MSA
123799769 5264 Brassicales-Malvales View MSA
124340569 5266 SBM View MSA
124250130 5268 Malvidae View MSA
124061100 5270 Rosid View MSA
123741476 5271 Pentapetalae View MSA
122793205 5272 Eudicot View MSA
122043544 5273 Angiosperm View MSA
121310145 5274 Embryophyte View MSA
123347714 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.582        
cufflinks 47.426     High  
cufflinks 9.775       Low
cufflinks 43.417     High  
cufflinks 13.092        
cufflinks 48.326     High  

0 Strain