Gene : AT4G01890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  219
Name:  ? AT4G01890 Secondary Identifier:  ? PAC:19646398
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01890 0.5kb upstream 0.5kb upstream 2719 true Chr4: 815710-818428 Arabidopsis thaliana
AT4G01890 0.5kb upstream 0.5kb upstream 500 false Chr4: 815710-816209 Arabidopsis thaliana
AT4G01890 0.5kb downstream 0.5kb downstream 2719 true Chr4: 816210-818928 Arabidopsis thaliana
AT4G01890 0.5kb downstream 0.5kb downstream 500 false Chr4: 818429-818928 Arabidopsis thaliana
AT4G01890 1.0kb upstream 1.0kb upstream 3219 true Chr4: 815210-818428 Arabidopsis thaliana
AT4G01890 1.0kb upstream 1.0kb upstream 1000 false Chr4: 815210-816209 Arabidopsis thaliana
AT4G01890 1.0kb downstream 1.0kb downstream 3219 true Chr4: 816210-819428 Arabidopsis thaliana
AT4G01890 1.0kb downstream 1.0kb downstream 1000 false Chr4: 818429-819428 Arabidopsis thaliana
AT4G01890 2.0kb upstream 2.0kb upstream 4219 true Chr4: 814210-818428 Arabidopsis thaliana
AT4G01890 2.0kb upstream 2.0kb upstream 2000 false Chr4: 814210-816209 Arabidopsis thaliana
AT4G01890 2.0kb downstream 2.0kb downstream 4219 true Chr4: 816210-820428 Arabidopsis thaliana
AT4G01890 2.0kb downstream 2.0kb downstream 2000 false Chr4: 818429-820428 Arabidopsis thaliana
AT4G01890 5.0kb upstream 5.0kb upstream 7219 true Chr4: 811210-818428 Arabidopsis thaliana
AT4G01890 5.0kb upstream 5.0kb upstream 5000 false Chr4: 811210-816209 Arabidopsis thaliana
AT4G01890 5.0kb downstream 5.0kb downstream 7219 true Chr4: 816210-823428 Arabidopsis thaliana
AT4G01890 5.0kb downstream 5.0kb downstream 5000 false Chr4: 818429-823428 Arabidopsis thaliana
AT4G01890 10.0kb upstream 10.0kb upstream 12219 true Chr4: 806210-818428 Arabidopsis thaliana
AT4G01890 10.0kb upstream 10.0kb upstream 10000 false Chr4: 806210-816209 Arabidopsis thaliana
AT4G01890 10.0kb downstream 10.0kb downstream 12219 true Chr4: 816210-828428 Arabidopsis thaliana
AT4G01890 10.0kb downstream 10.0kb downstream 10000 false Chr4: 818429-828428 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.136     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.378     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.608        

0 Strain