Gene : PPOX A. thaliana TAIR10
Primary Identifier:  ? AT4G01690 Defline:  (1 of 2) K00231 - oxygen-dependent protoporphyrinogen oxidase (PPOX, hemY)
Genomic Order:  196 Name:  ? AT4G01690
Secondary Identifier:  ? PAC:19644946
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CHLOROPHYLL-SYN Arabidopsis thaliana pathologic  
Athaliana HEME-BIOSYNTHESIS-II Arabidopsis thaliana pathologic  
Athaliana PWY-5918 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G01690 0.5kb upstream 0.5kb upstream 3047 true Chr4: 729387-732433 Arabidopsis thaliana
AT4G01690 0.5kb upstream 0.5kb upstream 500 false Chr4: 729387-729886 Arabidopsis thaliana
AT4G01690 0.5kb downstream 0.5kb downstream 3047 true Chr4: 729887-732933 Arabidopsis thaliana
AT4G01690 0.5kb downstream 0.5kb downstream 500 false Chr4: 732434-732933 Arabidopsis thaliana
AT4G01690 1.0kb upstream 1.0kb upstream 3547 true Chr4: 728887-732433 Arabidopsis thaliana
AT4G01690 1.0kb upstream 1.0kb upstream 1000 false Chr4: 728887-729886 Arabidopsis thaliana
AT4G01690 1.0kb downstream 1.0kb downstream 3547 true Chr4: 729887-733433 Arabidopsis thaliana
AT4G01690 1.0kb downstream 1.0kb downstream 1000 false Chr4: 732434-733433 Arabidopsis thaliana
AT4G01690 2.0kb upstream 2.0kb upstream 4547 true Chr4: 727887-732433 Arabidopsis thaliana
AT4G01690 2.0kb upstream 2.0kb upstream 2000 false Chr4: 727887-729886 Arabidopsis thaliana
AT4G01690 2.0kb downstream 2.0kb downstream 4547 true Chr4: 729887-734433 Arabidopsis thaliana
AT4G01690 2.0kb downstream 2.0kb downstream 2000 false Chr4: 732434-734433 Arabidopsis thaliana
AT4G01690 5.0kb upstream 5.0kb upstream 7547 true Chr4: 724887-732433 Arabidopsis thaliana
AT4G01690 5.0kb upstream 5.0kb upstream 5000 false Chr4: 724887-729886 Arabidopsis thaliana
AT4G01690 5.0kb downstream 5.0kb downstream 7547 true Chr4: 729887-737433 Arabidopsis thaliana
AT4G01690 5.0kb downstream 5.0kb downstream 5000 false Chr4: 732434-737433 Arabidopsis thaliana
AT4G01690 10.0kb upstream 10.0kb upstream 12547 true Chr4: 719887-732433 Arabidopsis thaliana
AT4G01690 10.0kb upstream 10.0kb upstream 10000 false Chr4: 719887-729886 Arabidopsis thaliana
AT4G01690 10.0kb downstream 10.0kb downstream 12547 true Chr4: 729887-742433 Arabidopsis thaliana
AT4G01690 10.0kb downstream 10.0kb downstream 10000 false Chr4: 732434-742433 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.238        
cufflinks 6.304        
cufflinks 31.938     High High
cufflinks 6.541        
cufflinks 27.26     High  
cufflinks 6.305        

0 Strain