Gene : AT4G00990 A. thaliana TAIR10
Defline:  (1 of 2) KOG1356 - Putative transcription factor 5qNCA, contains JmjC domain Genomic Order:  119
Name:  ? AT4G00990 Secondary Identifier:  ? PAC:19646409
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G00990 0.5kb upstream 0.5kb upstream 5378 true Chr4: 426444-431821 Arabidopsis thaliana
AT4G00990 0.5kb upstream 0.5kb upstream 500 false Chr4: 426444-426943 Arabidopsis thaliana
AT4G00990 0.5kb downstream 0.5kb downstream 5378 true Chr4: 426944-432321 Arabidopsis thaliana
AT4G00990 0.5kb downstream 0.5kb downstream 500 false Chr4: 431822-432321 Arabidopsis thaliana
AT4G00990 1.0kb upstream 1.0kb upstream 5878 true Chr4: 425944-431821 Arabidopsis thaliana
AT4G00990 1.0kb upstream 1.0kb upstream 1000 false Chr4: 425944-426943 Arabidopsis thaliana
AT4G00990 1.0kb downstream 1.0kb downstream 5878 true Chr4: 426944-432821 Arabidopsis thaliana
AT4G00990 1.0kb downstream 1.0kb downstream 1000 false Chr4: 431822-432821 Arabidopsis thaliana
AT4G00990 2.0kb upstream 2.0kb upstream 6878 true Chr4: 424944-431821 Arabidopsis thaliana
AT4G00990 2.0kb upstream 2.0kb upstream 2000 false Chr4: 424944-426943 Arabidopsis thaliana
AT4G00990 2.0kb downstream 2.0kb downstream 6878 true Chr4: 426944-433821 Arabidopsis thaliana
AT4G00990 2.0kb downstream 2.0kb downstream 2000 false Chr4: 431822-433821 Arabidopsis thaliana
AT4G00990 5.0kb upstream 5.0kb upstream 9878 true Chr4: 421944-431821 Arabidopsis thaliana
AT4G00990 5.0kb upstream 5.0kb upstream 5000 false Chr4: 421944-426943 Arabidopsis thaliana
AT4G00990 5.0kb downstream 5.0kb downstream 9878 true Chr4: 426944-436821 Arabidopsis thaliana
AT4G00990 5.0kb downstream 5.0kb downstream 5000 false Chr4: 431822-436821 Arabidopsis thaliana
AT4G00990 10.0kb upstream 10.0kb upstream 14878 true Chr4: 416944-431821 Arabidopsis thaliana
AT4G00990 10.0kb upstream 10.0kb upstream 10000 false Chr4: 416944-426943 Arabidopsis thaliana
AT4G00990 10.0kb downstream 10.0kb downstream 14878 true Chr4: 426944-441821 Arabidopsis thaliana
AT4G00990 10.0kb downstream 10.0kb downstream 10000 false Chr4: 431822-441821 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379858 5261 Brassicaceae View MSA
123802447 5264 Brassicales-Malvales View MSA
124299641 5266 SBM View MSA
124250418 5268 Malvidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.359        
cufflinks 9.562        
cufflinks 5.766       Low
cufflinks 9.793       High
cufflinks 6.102        
cufflinks 8.743        

0 Strain