Gene : hemf2 A. thaliana TAIR10
Primary Identifier:  ? AT4G03205 Defline:  (1 of 1) PTHR10755:SF0 - OXYGEN-DEPENDENT COPROPORPHYRINOGEN-III OXIDASE, MITOCHONDRIAL
Genomic Order:  374 Name:  ? AT4G03205
Secondary Identifier:  ? PAC:19644071
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CHLOROPHYLL-SYN Arabidopsis thaliana pathologic  
Athaliana HEME-BIOSYNTHESIS-II Arabidopsis thaliana pathologic  
Athaliana PWY-5918 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G03205 0.5kb upstream 0.5kb upstream 2618 true Chr4: 1412285-1414902 Arabidopsis thaliana
AT4G03205 0.5kb upstream 0.5kb upstream 500 false Chr4: 1412285-1412784 Arabidopsis thaliana
AT4G03205 0.5kb downstream 0.5kb downstream 2618 true Chr4: 1412785-1415402 Arabidopsis thaliana
AT4G03205 0.5kb downstream 0.5kb downstream 500 false Chr4: 1414903-1415402 Arabidopsis thaliana
AT4G03205 1.0kb upstream 1.0kb upstream 3118 true Chr4: 1411785-1414902 Arabidopsis thaliana
AT4G03205 1.0kb upstream 1.0kb upstream 1000 false Chr4: 1411785-1412784 Arabidopsis thaliana
AT4G03205 1.0kb downstream 1.0kb downstream 3118 true Chr4: 1412785-1415902 Arabidopsis thaliana
AT4G03205 1.0kb downstream 1.0kb downstream 1000 false Chr4: 1414903-1415902 Arabidopsis thaliana
AT4G03205 2.0kb upstream 2.0kb upstream 4118 true Chr4: 1410785-1414902 Arabidopsis thaliana
AT4G03205 2.0kb upstream 2.0kb upstream 2000 false Chr4: 1410785-1412784 Arabidopsis thaliana
AT4G03205 2.0kb downstream 2.0kb downstream 4118 true Chr4: 1412785-1416902 Arabidopsis thaliana
AT4G03205 2.0kb downstream 2.0kb downstream 2000 false Chr4: 1414903-1416902 Arabidopsis thaliana
AT4G03205 5.0kb upstream 5.0kb upstream 7118 true Chr4: 1407785-1414902 Arabidopsis thaliana
AT4G03205 5.0kb upstream 5.0kb upstream 5000 false Chr4: 1407785-1412784 Arabidopsis thaliana
AT4G03205 5.0kb downstream 5.0kb downstream 7118 true Chr4: 1412785-1419902 Arabidopsis thaliana
AT4G03205 5.0kb downstream 5.0kb downstream 5000 false Chr4: 1414903-1419902 Arabidopsis thaliana
AT4G03205 10.0kb upstream 10.0kb upstream 12118 true Chr4: 1402785-1414902 Arabidopsis thaliana
AT4G03205 10.0kb upstream 10.0kb upstream 10000 false Chr4: 1402785-1412784 Arabidopsis thaliana
AT4G03205 10.0kb downstream 10.0kb downstream 12118 true Chr4: 1412785-1424902 Arabidopsis thaliana
AT4G03205 10.0kb downstream 10.0kb downstream 10000 false Chr4: 1414903-1424902 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031046 5273 Angiosperm View MSA
122330375 5261 Brassicaceae Singleton cluster - no MSA
123771625 5264 Brassicales-Malvales Singleton cluster - no MSA
124270153 5266 SBM Singleton cluster - no MSA
124126247 5268 Malvidae Singleton cluster - no MSA
123855171 5270 Rosid Singleton cluster - no MSA
123441164 5271 Pentapetalae Singleton cluster - no MSA
122476749 5272 Eudicot Singleton cluster - no MSA
121300145 5274 Embryophyte View MSA
123337946 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.532       Low
cufflinks 11.113       High
cufflinks 7.26        
cufflinks 8.568        
cufflinks 5.125        
cufflinks 7.733        

0 Strain