Sequence Feature Displayer
Ontology Annotation Displayer
2 Pathways
Pathway Identifier | Organism Name | Analysis Method | Analysis Status |
---|---|---|---|
Athaliana PWY-1042 | Arabidopsis thaliana | pathologic | |
Athaliana PWY-5464 | Arabidopsis thaliana | pathologic |
Other
20 Flanking Regions
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location | Organism Name |
---|---|---|---|---|---|---|
AT4G08876 0.5kb upstream | 0.5kb | upstream | 834 | true | Chr4: 5676895-5677728 | Arabidopsis thaliana |
AT4G08876 0.5kb upstream | 0.5kb | upstream | 500 | false | Chr4: 5676895-5677394 | Arabidopsis thaliana |
AT4G08876 0.5kb downstream | 0.5kb | downstream | 834 | true | Chr4: 5677395-5678228 | Arabidopsis thaliana |
AT4G08876 0.5kb downstream | 0.5kb | downstream | 500 | false | Chr4: 5677729-5678228 | Arabidopsis thaliana |
AT4G08876 1.0kb upstream | 1.0kb | upstream | 1334 | true | Chr4: 5676395-5677728 | Arabidopsis thaliana |
AT4G08876 1.0kb upstream | 1.0kb | upstream | 1000 | false | Chr4: 5676395-5677394 | Arabidopsis thaliana |
AT4G08876 1.0kb downstream | 1.0kb | downstream | 1334 | true | Chr4: 5677395-5678728 | Arabidopsis thaliana |
AT4G08876 1.0kb downstream | 1.0kb | downstream | 1000 | false | Chr4: 5677729-5678728 | Arabidopsis thaliana |
AT4G08876 2.0kb upstream | 2.0kb | upstream | 2334 | true | Chr4: 5675395-5677728 | Arabidopsis thaliana |
AT4G08876 2.0kb upstream | 2.0kb | upstream | 2000 | false | Chr4: 5675395-5677394 | Arabidopsis thaliana |
AT4G08876 2.0kb downstream | 2.0kb | downstream | 2334 | true | Chr4: 5677395-5679728 | Arabidopsis thaliana |
AT4G08876 2.0kb downstream | 2.0kb | downstream | 2000 | false | Chr4: 5677729-5679728 | Arabidopsis thaliana |
AT4G08876 5.0kb upstream | 5.0kb | upstream | 5334 | true | Chr4: 5672395-5677728 | Arabidopsis thaliana |
AT4G08876 5.0kb upstream | 5.0kb | upstream | 5000 | false | Chr4: 5672395-5677394 | Arabidopsis thaliana |
AT4G08876 5.0kb downstream | 5.0kb | downstream | 5334 | true | Chr4: 5677395-5682728 | Arabidopsis thaliana |
AT4G08876 5.0kb downstream | 5.0kb | downstream | 5000 | false | Chr4: 5677729-5682728 | Arabidopsis thaliana |
AT4G08876 10.0kb upstream | 10.0kb | upstream | 10334 | true | Chr4: 5667395-5677728 | Arabidopsis thaliana |
AT4G08876 10.0kb upstream | 10.0kb | upstream | 10000 | false | Chr4: 5667395-5677394 | Arabidopsis thaliana |
AT4G08876 10.0kb downstream | 10.0kb | downstream | 10334 | true | Chr4: 5677395-5687728 | Arabidopsis thaliana |
AT4G08876 10.0kb downstream | 10.0kb | downstream | 10000 | false | Chr4: 5677729-5687728 | Arabidopsis thaliana |
10 Protein Familys
Cluster ID | Method ID | Method Name | Sequence Alignment |
---|---|---|---|
121494639 | 5273 | Angiosperm | Singleton cluster - no MSA |
122330370 | 5261 | Brassicaceae | Singleton cluster - no MSA |
123771621 | 5264 | Brassicales-Malvales | Singleton cluster - no MSA |
124270149 | 5266 | SBM | Singleton cluster - no MSA |
124126243 | 5268 | Malvidae | Singleton cluster - no MSA |
123855167 | 5270 | Rosid | Singleton cluster - no MSA |
123441160 | 5271 | Pentapetalae | Singleton cluster - no MSA |
122476745 | 5272 | Eudicot | Singleton cluster - no MSA |
120768008 | 5274 | Embryophyte | Singleton cluster - no MSA |
122810399 | 5275 | Viridiplantae | Singleton cluster - no MSA |
6 Rna Seq Expressionss
Analysis Method | Abundance | Low Confidence Limit | High Confidence Limit | Relative Library Expression | Relative Locus Expression |
---|---|---|---|---|---|
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 0.107 | Low | |||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 0.034 | Low | |||
cufflinks | 0.0 | Not Expressed | Not Expressed |